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Merge pull request #428 from massimoaria/master
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sync master and develop
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massimoaria authored Feb 29, 2024
2 parents 2a22aa2 + 583dc76 commit fd5d58c
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2 changes: 1 addition & 1 deletion R/collabByRegionPlot.R
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#' \code{type="fruchterman"}\tab \tab Fruchterman-Reingold layout\cr
#' \code{type="kamada"}\tab \tab Kamada-Kawai layout}
#'
#' @param vos.path is a character indicating the full path whre VOSviewer.jar is located.
#' @param vos.path is a character indicating the full path where VOSviewer.jar is located.
#' @param size is integer. It defines the size of each vertex. Default is \code{size=3}.
#' @param size.cex is logical. If TRUE the size of each vertex is proportional to its degree.
#' @param noloops is logical. If TRUE loops in the network are deleted.
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2 changes: 1 addition & 1 deletion R/conceptualStructure.R
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Expand Up @@ -22,7 +22,7 @@ utils::globalVariables(c("label"))
#' An n-gram is a contiguous sequence of n terms. The function can extract n-grams composed by 1, 2, 3 or 4 terms. Default value is \code{ngrams=1}.
#' @param method is a character object. It indicates the factorial method used to create the factorial map. Use \code{method="CA"} for Correspondence Analysis,
#' \code{method="MCA"} for Multiple Correspondence Analysis or \code{method="MDS"} for Metric Multidimensional Scaling. The default is \code{method="MCA"}
#' @param minDegree is an integer. It indicates the minimum occurrences of terms to analize and plot. The default value is 2.
#' @param minDegree is an integer. It indicates the minimum occurrences of terms to analyze and plot. The default value is 2.
#' @param clust is an integer or a character. If clust="auto", the number of cluster is chosen automatically, otherwise clust can be an integer between 2 and 8.
#' @param k.max is an integer. It indicates the maximum number of cluster to keep. The default value is 5. The max value is 20.
#' @param stemming is logical. If TRUE the Porter's Stemming algorithm is applied to all extracted terms. The default is \code{stemming = FALSE}.
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2 changes: 1 addition & 1 deletion R/convert2df.R
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#' @param remove.duplicates is logical. If TRUE, the function will remove duplicated items checking by DOI and database ID.
#' @return a data frame with cases corresponding to articles and variables to Field Tags in the original export file.
#'
#' I.e We have three files downlaod from Web of Science in plaintext format, file will be:
#' I.e We have three files download from Web of Science in plaintext format, file will be:
#'
#' file <- c("filename1.txt", "filename2.txt", "filename3.txt")
#'
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4 changes: 2 additions & 2 deletions R/histNetwork.R
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#' @param M is a bibliographic data frame obtained by the converting function
#' \code{\link{convert2df}}. It is a data matrix with cases corresponding to
#' manuscripts and variables to Field Tag in the original SCOPUS, OpenAlex, Lens.org and Clarivate
#' Analitics Web of Science file.
#' Analytics Web of Science file.
#' @param min.citations DEPRECATED. New algorithm does not use this parameters. It will be remove in the next version of bibliometrix.
#' @param sep is the field separator character. This character separates strings
#' in CR column of the data frame. The default is \code{sep = ";"}.
#' @param network is logical. If TRUE, fuction calculates and returns also the direct citation network. If FALSE,
#' @param network is logical. If TRUE, function calculates and returns also the direct citation network. If FALSE,
#' the function returns only the local citation table.
#' @param verbose is logical. If TRUE, results are printed on screen.
#' @return \code{histNetwork} returns an object of \code{class} "list"
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2 changes: 1 addition & 1 deletion R/lotka.R
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#' \code{C} \tab \tab Constant coefficient\cr
#' \code{R2} \tab \tab Goodness of Fit\cr
#' \code{fitted} \tab \tab Fitted Values\cr
#' \code{p.value} \tab \tab Pvalue of two-sample Kolmogorov-Smirnov test between the empirical and the theorical Lotka's Law distribution (with Beta=2)\cr
#' \code{p.value} \tab \tab Pvalue of two-sample Kolmogorov-Smirnov test between the empirical and the theoretical Lotka's Law distribution (with Beta=2)\cr
#' \code{AuthorProd} \tab \tab Authors' Productivity frequency table}
#'
#' @examples
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2 changes: 1 addition & 1 deletion R/net2VOSviewer.R
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#'
#'
#' @param net is an object created by networkPlot function.
#' @param vos.path is a character indicating the full path whre VOSviewer.jar is located.
#' @param vos.path is a character indicating the full path where VOSviewer.jar is located.
#' @return It write a .net file that can be open in VOSviewer
#'
#' @examples
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2 changes: 1 addition & 1 deletion R/networkPlot.R
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#' \code{type="kamada"}\tab \tab Kamada-Kawai layout}
#'
#' @param Title is a character indicating the plot title.
#' @param vos.path is a character indicating the full path whre VOSviewer.jar is located.
#' @param vos.path is a character indicating the full path where VOSviewer.jar is located.
#' @param size is integer. It defines the size of each vertex. Default is \code{size=3}.
#' @param size.cex is logical. If TRUE the size of each vertex is proportional to its degree.
#' @param noloops is logical. If TRUE loops in the network are deleted.
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2 changes: 1 addition & 1 deletion R/plot.bibliodendrogram.R
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#'
#' \code{plot} method for class '\code{bibliodendrogram}'
#' @param x is the object for which plots are desired.
#' @param ... is a geenric param for plot functions.
#' @param ... is a generic param for plot functions.
#' @return The function \code{plot} draws a dendrogram.
#'
#'
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2 changes: 1 addition & 1 deletion R/splitCommunities.R
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#'
#' \code{networkPlot} Create a network plot with separated communities.
#'
#' The function \code{\link{splitCommunities}} splits communitites in separated subnetworks from a bibliographic network plot previously created by \code{\link{networkPlot}}.
#' The function \code{\link{splitCommunities}} splits communities in separated subnetworks from a bibliographic network plot previously created by \code{\link{networkPlot}}.
#'
#' @param graph is a network plot obtained by the function \code{\link{networkPlot}}.
#' @param n is an integer. It indicates the number of vertices to plot for each community.
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2 changes: 1 addition & 1 deletion R/thematicMap.R
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Expand Up @@ -5,7 +5,7 @@ globalVariables(".")
#' The methodology is inspired by the proposal of Cobo et al. (2011).
#'
#' \code{thematicMap} starts from a co-occurrence keyword network to plot in a
#' two-dimesional map the typological themes of a domain.\cr\cr
#' two-dimensional map the typological themes of a domain.\cr\cr
#'
#' Reference:\cr
#' Cobo, M. J., Lopez-Herrera, A. G., Herrera-Viedma, E., & Herrera, F. (2011). An approach for detecting, quantifying,
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6 changes: 3 additions & 3 deletions README.Rmd
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Expand Up @@ -76,7 +76,7 @@ It supports scholars in easy use of the main features of bibliometrix:

- Intellectual Structure

- Social Strucutre
- Social Structure



Expand Down Expand Up @@ -145,7 +145,7 @@ The export file can be read and converted using by R using the function *convert

**convert2df**(*file*, *dbsource*, *format*)

The argument *file* is a character vector containing the name of export files downloaded from SCOPUS, Clarivate Analytics WoS, OpenAlex, Digital Science Dimensions, PubMed or Cochrane CDSR website. *file* can also contains the name of a json/xlm object download using OpenAlex, Digital Science Dimenions or PubMed APIs (through the packages *openalexR*, *dimensionsR* and *pubmedR*.
The argument *file* is a character vector containing the name of export files downloaded from SCOPUS, Clarivate Analytics WoS, OpenAlex, Digital Science Dimensions, PubMed or Cochrane CDSR website. *file* can also contains the name of a json/xlm object download using OpenAlex, Digital Science Dimensions or PubMed APIs (through the packages *openalexR*, *dimensionsR* and *pubmedR*.

es. file <- c("file1.txt","file2.txt", ...)

Expand Down Expand Up @@ -365,7 +365,7 @@ D'Aniello, L., Spano, M., Cuccurullo, C., & Aria, M. (2022). Academic Health Cen

Aria M., Misuraca M., Spano M. (2020) Mapping the evolution of social research and data science on 30 years of Social Indicators Research, *Social Indicators Research*. (DOI: https://doi.org/10.1007/s11205-020-02281-3)

Aria M., Alterisio A., Scandurra A, Pinelli C., D’Aniello B, (2021) The scholar’s best friend: research trends in dog cognitive and behavioural studies, A*nimal Cognition*. (https://doi.org/10.1007/s10071-020-01448-2)
Aria M., Alterisio A., Scandurra A, Pinelli C., D’Aniello B, (2021) The scholar’s best friend: research trends in dog cognitive and behavioural studies, *Animal Cognition*. (https://doi.org/10.1007/s10071-020-01448-2)

Cuccurullo, C., Aria, M., & Sarto, F. (2016). Foundations and trends in performance management. A twenty-five years bibliometric analysis in business and public administration domains, *Scientometrics*, DOI: 10.1007/s11192-016-1948-8 (https://doi.org/10.1007/s11192-016-1948-8)

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8 changes: 4 additions & 4 deletions README.md
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Expand Up @@ -77,7 +77,7 @@ It supports scholars in easy use of the main features of bibliometrix:

- Intellectual Structure

- Social Strucutre
- Social Structure

### How to use biblioshiny

Expand All @@ -86,7 +86,7 @@ bibliometrix website <https://www.bibliometrix.org/>

## How to cite bibliometrix

If you use this package for your research, we must cite it.
If you use this package for your research, you must cite it.

To cite bibliometrix in publications, please use:

Expand Down Expand Up @@ -151,7 +151,7 @@ The argument *file* is a character vector containing the name of export
files downloaded from SCOPUS, Clarivate Analytics WoS, OpenAlex, Digital
Science Dimensions, PubMed or Cochrane CDSR website. *file* can also
contains the name of a json/xlm object download using OpenAlex, Digital
Science Dimenions or PubMed APIs (through the packages *openalexR*,
Science Dimensions or PubMed APIs (through the packages *openalexR*,
*dimensionsR* and *pubmedR*.

es. file \<- c(“file1.txt”,“file2.txt”, …)
Expand Down Expand Up @@ -707,7 +707,7 @@ research and data science on 30 years of Social Indicators Research,

Aria M., Alterisio A., Scandurra A, Pinelli C., D’Aniello B, (2021) The
scholar’s best friend: research trends in dog cognitive and behavioural
studies, A*nimal Cognition*.
studies, *Animal Cognition*.
(<https://doi.org/10.1007/s10071-020-01448-2>)

Cuccurullo, C., Aria, M., & Sarto, F. (2016). Foundations and trends in
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2 changes: 1 addition & 1 deletion man/bibliometrix-package.Rd
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Expand Up @@ -186,7 +186,7 @@ Cuccurullo, C., Aria, M., & Sarto, F. (2013). Twenty years of research on perfor
\concept{co-citations}
\concept{network}
\concept{co-authors}
\concept{co-occurences}
\concept{co-occurrences}
\concept{collaboration}
\concept{co-word analysis}

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