v1.0.0

Changelog

All notable changes to this project will be documented in this file.

[1.0.0] - 2024-11-24

Added

• Initial release of nf-varcall, a Nextflow-based pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.
• Modules: data_qc, pbmm2, deepvariant, filter_variants, merge_vcf, vep, alignment_summary, report.
• Configuration: Support for Docker containers to ensure reproducibility.
• README.md for usage instructions, input/output specifications, and configuration options.
• Makefile to setup the VEP cache (homo_sapiens_merged_vep_113_GRCh38) and example data.