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Workflow comparison
Collins Kigen edited this page Dec 17, 2021
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| Criteria | nf-core/ampliseq | TADA | MBBU Accreditation Qiime | MBBU Accreditation dada2 |
|---|---|---|---|---|
| Runtime | 21 minutes | 46 minutes | # | # |
| Setup | Easy, 1 command | Easy, 1 command | Hard, edit configs | Hard |
| Functionality | Qiime, Visualization, functional analysis | dada2 | Qiime | dada2 |
| Last updated | 2 months | 3 months | 8 months | 8 months |
| Documentation | Well documented | Well documented | Lack setup instructions | Not well documented |
| Gaps | None | Test data, Functional analysis, visualization | Test config, functional analysis | Not automated |
| Seq | 16S, 18S, ITS | 16S, ITS | 16S | 16S |