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Workflow comparison
Collins Kigen edited this page Dec 17, 2021
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Criteria | nf-core/ampliseq | TADA | MBBU Accreditation Qiime | MBBU Accreditation dada2 |
---|---|---|---|---|
Runtime | 21 minutes | 46 minutes | # | # |
Setup | Easy, 1 command | Easy, 1 command | Hard, edit configs | Hard |
Functionality | # | # | # | |
Last updated | 2 months | 3 months | 8 months | 8 months |
Documentation | Well documented | Well documented | Lack setup instructions | Not well documented |
Gaps | None | Test data, Functional analysis, visualization | Test config, functional analysis | Not automated |
Seq | 16S, 18S, ITS | 16S, ITS | 16S | 16S |
Recommendation | # | # | # |