training-materials-and-resources

Materials used to train students, interns and new staff

Pre-Internship survey

Post-Internship survey

Collaborative tools

• Git and Github
• Slack
• Markdown

Reproducibility tools

• Rmarkdown
• Jupyter
• Conda and miniconda

Data management

• Project Organization and Management for Genomics

Command line utilities

• Linux/Unix/Bash
  • IntroductoryLinux-2019
  • BASH-Intro-2018
  • The unix shell
  • Intro to linux
  • Guide for beginners
  • Unix resource

Workflows

• Nextflow
  • Bioinformatics Workbook
  • Seqera labs

Scripting

• Python
  • Python4Bioinformatics2019
  • Programming with Python
  • Plotting and Programming in Python
• R
  • R tutor
  • Intro to R
  • Programming with R
  • R for Reproducible Scientific Analysis

Machine learning

• ml-basics

All-round resources

• Central dogma of molecular biology
• Happy Belly Bioinformatics
• Bioinformatics Workbook
• Training in Bioinformatics
• Data science and the commandline
• Awesome-Bioinformatics
• Awesome-Bioinformatics-benchmarks