CZI to PNG Converter

A python program to convert CZI image to PNG image. The program reads CZI images from a given input directory, processes them and finally writes the PNG images into a given output directory.

Installation

• Clone the repo and navigate into the directory czi_to_png.

• Create virtual envrionment:

python -m venv .venv 

• Activate virtual environment:

.\.venv\Scripts\activate

• Install dependencies using pip:

pip install -r .\requirements.txt

Run

• Navigate into the directory czi_to_png.

• Activate virtual environment:

.\.venv\Scripts\activate

• Run the program by passing the absolute path of input and output directory:

python .\main.py --input "input_directory" --output "output_directory"