This package makes calls to and parses responses from Memorial Sloan Kettering's OncoTree API (mskcc.oncotree.org).
library(devtools)
install_github("meerapatelmd/OncoTree")
OncoTree maps to both the UMLS Metathesaurus CUI and the NCI Thesaurus Code. Other packages available to crosswalk to the UMLS MTH:
- setupMetathesaurus: instantiate a UMLS MySQL or Postgres database
- metaoriteSQL: MySQL methods
- metaorite: Postgres methods
- CallMeMaybe: R interface with the UMLS API
Please note that the OncoSeed project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.