Add PhILR transformation #1195
Annotations
12 errors and 21 warnings
ubuntu-latest (auto)
Process completed with exit code 1.
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ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
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ubuntu-latest (auto)
[Workflow Telemetry] Error
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ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
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ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
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ubuntu-latest (auto)
[Workflow Telemetry] Error
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ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
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windows-latest (auto)
R CMD check found WARNINGs
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windows-latest (auto)
Process completed with exit code 1.
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macOS-latest (auto)
No such keg: /opt/homebrew/Cellar/pkg-config@0.29.2
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macOS-latest (auto)
R CMD check found WARNINGs
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macOS-latest (auto)
Process completed with exit code 1.
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windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:
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windows-latest (auto)
C:/Users/runneradmin/AppData/Local/Temp/RtmpE5ZX02/Rbuild13f0b2e5288/mia/man/transformAssay.Rd:111: unexpected '{', expecting ']'
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windows-latest (auto)
C:/Users/runneradmin/AppData/Local/Temp/RtmpE5ZX02/Rbuild13f0b2e5288/mia/man/transformAssay.Rd:111: unexpected '}', expecting '{'
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windows-latest (auto)
C:/Users/runneradmin/AppData/Local/Temp/RtmpSYi74i/R.INSTALLe101b421a4/mia/man/transformAssay.Rd:111: unexpected '{', expecting ']'
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windows-latest (auto)
C:/Users/runneradmin/AppData/Local/Temp/RtmpSYi74i/R.INSTALLe101b421a4/mia/man/transformAssay.Rd:111: unexpected '}', expecting '{'
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windows-latest (auto)
C:/Users/runneradmin/AppData/Local/Temp/Rtmpi29s12/Rbuild19906db244b6/mia/man/transformAssay.Rd:111: unexpected '{', expecting ']'
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windows-latest (auto)
C:/Users/runneradmin/AppData/Local/Temp/Rtmpi29s12/Rbuild19906db244b6/mia/man/transformAssay.Rd:111: unexpected '}', expecting '{'
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windows-latest (auto)
'::' or ':::' import not declared from: 'philr'
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windows-latest (auto)
prepare_Rd: ./man/transformAssay.Rd:111: unexpected '{', expecting ']'
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windows-latest (auto)
Package unavailable to check Rd xrefs: 'philr'
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Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results", "macOS-biocversion-devel-r-auto-results", "Windows-biocversion-devel-r-auto-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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macOS-latest (auto)
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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macOS-latest (auto)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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macOS-latest (auto)
harfbuzz 10.2.0 is already installed and up-to-date.
To reinstall 10.2.0, run:
brew reinstall harfbuzz
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macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
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macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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macOS-latest (auto)
/private/var/folders/84/5079cppj57s0lzywhyzcxkjc0000gn/T/Rtmpfa9Y3o/Rbuild49bd78afd8b7/mia/man/transformAssay.Rd:111: unexpected '{', expecting ']'
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macOS-latest (auto)
/private/var/folders/84/5079cppj57s0lzywhyzcxkjc0000gn/T/Rtmpfa9Y3o/Rbuild49bd78afd8b7/mia/man/transformAssay.Rd:111: unexpected '}', expecting '{'
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macOS-latest (auto)
/private/var/folders/84/5079cppj57s0lzywhyzcxkjc0000gn/T/RtmpZeb3cm/R.INSTALL49d2424cbfda/mia/man/transformAssay.Rd:111: unexpected '{', expecting ']'
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Artifacts
Produced during runtime
Name | Size | |
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Linux-biocversion-devel-r-auto-results
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12.7 MB |
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Windows-biocversion-devel-r-auto-results
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13.2 MB |
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macOS-biocversion-devel-r-auto-results
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13.2 MB |
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