Merge pull request #92 from monarch-initiative/name_change

Change name from `curate-gpt` to `curategpt`

.cruft.json

@@ -4,9 +4,9 @@
   "checkout": null,
   "context": {
     "cookiecutter": {
-      "project_name": "curate-gpt",
+      "project_name": "curategpt",
       "github_org_name": "monarch-initiative",
-      "__project_slug": "curate_gpt",
+      "__project_slug": "curategpt",
       "project_description": "GPT-powered knowledge acquisition UI",
       "min_python_version": "3.8",
       "file_name": "main",

.github/workflows/qc.yml

@@ -1,4 +1,4 @@
-name: curate-gpt QC
+name: curategpt QC
 
 on:
   push:

CITATION.cff

@@ -7,7 +7,7 @@ authors:
 - family-names: "Mungall"
   given-names: "Chris"
   orcid: "https://orcid.org/0000-0002-6601-2165"
-title: "Curate-GPT"
+title: "CurateGPT"
 doi: 10.5281/zenodo.8388002
 date-released: 2023-08-01
-url: "https://github.com/monarch-initiative/curate-gpt"
+url: "https://github.com/monarch-initiative/curategpt"

CONTRIBUTING.md

@@ -6,7 +6,7 @@ When contributing to this repository, please first discuss the changes you wish
 
 ### Reporting bugs or making feature requests
 
-To report a bug or suggest a new feature, please go to the [monarch-initiative/curate-gpt issue tracker](https://github.com/monarch-initiative/curate-gpt/issues), as we are
+To report a bug or suggest a new feature, please go to the [monarch-initiative/curategpt issue tracker](https://github.com/monarch-initiative/curategpt/issues), as we are
 consolidating issues there.
 
 Please supply enough details to the developers to enable them to verify and troubleshoot your issue:
@@ -46,7 +46,7 @@ and make your changes on a [new branch][about-branches].
 [about-branches]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-branches
 [about-issues]: https://docs.github.com/en/issues/tracking-your-work-with-issues/about-issues
 [about-pulls]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-pull-requests
-[issues]: https://github.com/monarch-initiative/curate-gpt/issues/
-[pulls]: https://github.com/monarch-initiative/curate-gpt/pulls/
+[issues]: https://github.com/monarch-initiative/curategpt/issues/
+[pulls]: https://github.com/monarch-initiative/curategpt/pulls/
 
 We recommend also reading [GitHub Pull Requests: 10 Tips to Know](https://blog.mergify.com/github-pull-requests-10-tips-to-know/)

LICENSE

@@ -12,7 +12,7 @@ modification, are permitted provided that the following conditions are met:
   this list of conditions and the following disclaimer in the documentation
   and/or other materials provided with the distribution.
 
-* Neither the name of pytest-curate-gpt nor the names of its
+* Neither the name of curategpt nor the names of its
   contributors may be used to endorse or promote products derived from
   this software without specific prior written permission.
 

README.md

@@ -15,11 +15,11 @@ subset of the functionality of the local app)
 
 You will first need to [install Poetry](https://python-poetry.org/docs/#installation).
 
-Then clone this repo 
+Then clone this repo.
 
 ```
-git clone https://github.com/monarch-initiative/curate-gpt.git
-cd curate-gpt
+git clone https://github.com/monarch-initiative/curategpt.git
+cd curategpt
 ```
 
 and install the dependencies:
@@ -131,7 +131,7 @@ The following are also supported:
 
 Currently this tool works best with the OpenAI gpt-4 model (for instruction tasks) and OpenAI `ada-text-embedding-002` for embedding.
 
-Curate-GPT is layered on top of [simonw/llm](https://github.com/simonw/llm) which has a plugin
+CurateGPT is layered on top of [simonw/llm](https://github.com/simonw/llm) which has a plugin
 architecture for using alternative models. In theory you can use any of these plugins.
 
 Additionally, you can set up an openai-emulating proxy using [litellm](https://github.com/BerriAI/litellm/).

docs/index.rst

@@ -1,9 +1,9 @@
-.. curate-gpt documentation master file, created by
+.. curategpt documentation master file, created by
    sphinx-quickstart on Fri Aug 12 08:35:01 2022.
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-Welcome to curate-gpt's documentation!
+Welcome to curategpt's documentation!
 =========================================================
 
 .. toctree::

pyproject.toml

@@ -1,7 +1,7 @@
 [tool.poetry]
-name = "curate-gpt"
+name = "curategpt"
 version = "0.2.0"
-description = "curate-gpt"
+description = "CurateGPT"
 authors = ["Author 1 <cjmungall@lbl.gov>"]
 license = "BSD-3"
 readme = "README.md"

src/curate_gpt/app/app.py

@@ -707,7 +707,7 @@ def _flat(obj: dict, limit=40) -> dict:
     st.subheader("Issues")
     st.write(
         "If you have any issues, please raise them on the"
-        "[GitHub issue tracker](https://github.com/monarch-initiative/curate-gpt)."
+        "[GitHub issue tracker](https://github.com/monarch-initiative/curategpt)."
     )
     st.subheader("Warning!")
     st.caption("CurateGPT is pre-alpha, documentation is incomplete!")

src/curate_gpt/cli.py

@@ -1,4 +1,4 @@
-"""Command line interface for curate-gpt."""
+"""Command line interface for curategpt."""
 
 import csv
 import gzip
@@ -208,7 +208,7 @@ def show_chat_response(response: ChatResponse, show_references: bool = True):
 @click.version_option(__version__)
 def main(verbose: int, quiet: bool):
     """
-    CLI for curate-gpt.
+    CLI for curategpt.
 
     :param verbose: Verbosity while running.
     :param quiet: Boolean to be quiet or verbose.

tests/__init__.py

@@ -1,4 +1,4 @@
-"""Tests for curate-gpt."""
+"""Tests for curategpt."""
 
 import os
 from pathlib import Path