ORDO Mappings

- Delete: Unnecessary files and goals: temp analysis, getting of ordo.owl and querying it via SPARQL.
monarch-initiative · Apr 6, 2024 · 2fe4b19 · 2fe4b19
1 parent 12dc3d1
commit 2fe4b19
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Showing 3 changed files with 1 addition and 59 deletions.
diff --git a/makefile b/makefile
@@ -42,13 +42,7 @@ tmp/input/Orphanet_Nomenclature_Pack_EN/ORPHA_ICD11_mapping_en_newversion_2023.x
 	wget https://www.orphadata.com/data/nomenclature/packs/Orphanet_Nomenclature_Pack_EN.zip -O tmp/input/Orphanet_Nomenclature_Pack_EN.zip
 	unzip tmp/input/Orphanet_Nomenclature_Pack_EN.zip -d tmp/input/Orphanet_Nomenclature_Pack_EN
 
-tmp/input/ordo.owl: | tmp/input/
-	wget http://www.orphadata.org/data/ORDO/ordo_orphanet.owl -O $@
-
-tmp/output/icd11mms-exact-matches.tsv: tmp/input/ordo.owl
-	robot query -i $< --query src/icd11mms-exact-matches.sparql $@
-
-tmp/output/release/ordo-icd11.sssom.tsv: tmp/input/Orphanet_Nomenclature_Pack_EN/ORPHA_ICD11_mapping_en_newversion_2023.xml tmp/output/icd11mms-exact-matches.tsv | tmp/output/release/
+tmp/output/release/ordo-icd11.sssom.tsv: tmp/input/Orphanet_Nomenclature_Pack_EN/ORPHA_ICD11_mapping_en_newversion_2023.xml | tmp/output/release/
 	python3 src/mappings.py \
 	--input-nomenclature-xml tmp/input/Orphanet_Nomenclature_Pack_EN/ORPHA_ICD11_mapping_en_newversion_2023.xml \
 	--input-sssom-config config/icd11.sssom-metadata.yml \

diff --git a/src/icd11mms-exact-matches.sparql b/src/icd11mms-exact-matches.sparql
diff --git a/src/temp_compare_matches_owl_and_nomenclature.py b/src/temp_compare_matches_owl_and_nomenclature.py