Temp: ORDO mappings analysis

Exploratory analysis to try to find the best way to get ORDO<->ICD11Foundation mappings.

.gitignore

@@ -130,3 +130,6 @@ dmypy.json
 
 .idea/
 tmp/
+
+# Custom
+_archive/

config/icd11.sssom-metadata.yml

@@ -0,0 +1,19 @@
+creator_id: 0000-0002-2906-7319
+curie_map:
+  GTR: http://purl.obolibrary.org/obo/mondo/mappings/unknown_prefix/GTR/
+  HP: http://purl.obolibrary.org/obo/HP_
+  MESH: http://identifiers.org/mesh/
+  MONDO: http://purl.obolibrary.org/obo/MONDO_
+  NCIT: http://purl.obolibrary.org/obo/NCIT_
+  OMIM: https://omim.org/entry/
+  Orphanet: http://www.orpha.net/ORDO/Orphanet_
+  SCTID: http://identifiers.org/snomedct/
+  UMLS: http://purl.obolibrary.org/obo/UMLS_
+  oboInOwl: http://www.geneontology.org/formats/oboInOwl#
+  owl: http://www.w3.org/2002/07/owl#
+  rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
+  rdfs: http://www.w3.org/2000/01/rdf-schema#
+  semapv: https://w3id.org/semapv/
+  skos: http://www.w3.org/2004/02/skos/core#
+  sssom: https://w3id.org/sssom/
+license: http://w3id.org/sssom/license/unspecified

makefile

@@ -26,6 +26,7 @@ tmp/input/:
 
 tmp/input/source.owl: tmp/input/source.gz
 	gunzip -c $< > $@
+	rm $<
 
 tmp/input/source.gz: | tmp/input/
 	wget ${SOURCE_URL} -O $@
@@ -35,6 +36,16 @@ release: | tmp/output/release/
 	@test $(VERSION)
 	gh release create $(VERSION) --notes "New release." --title "$(VERSION)" tmp/output/release/*
 
+# Mappings
+tmp/input/mappings.json: | tmp/input/
+	wget -qO tmp/input/en_product1.json.tar.gz https://www.orphadata.com/data/json/en_product1.json.tar.gz
+	tar -xvf tmp/input/en_product1.json.tar.gz -C tmp/input/
+	mv tmp/input/en_product1.json $@
+	rm tmp/input/en_product1.json.tar.gz
+
+tmp/output/release/ordo-icd11.sssom.tsv: tmp/input/mappings.json | tmp/output/release/
+	python3 src/make_sssom.py $< > $@
+
 # HELP -----------------------------------------------------------------------------------------------------------------
 help:
 	@echo "-----------------------------------"