add disease_context_qualifier to model and regenerate artifacts (#850)

Needs to stay in draft until a new kg is build with disease_context_qualifier
monarch-initiative · Oct 17, 2024 · 43c3200 · 43c3200
1 parent 2c878e8
commit 43c3200
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diff --git a/Makefile b/Makefile
@@ -77,7 +77,7 @@ install-frontend:
 
 .PHONY: model
 model: install-backend	
-	$(RUN) gen-pydantic --pydantic-version 2 --extra-fields allow $(SCHEMADIR)/model.yaml > $(SCHEMADIR)/model.py
+	$(RUN) gen-pydantic --extra-fields allow $(SCHEMADIR)/model.yaml > $(SCHEMADIR)/model.py
 	$(RUN) gen-typescript $(SCHEMADIR)/model.yaml > frontend/src/api/model.ts
 	make format
 

diff --git a/backend/poetry.lock b/backend/poetry.lock
diff --git a/backend/pyproject.toml b/backend/pyproject.toml
@@ -17,7 +17,7 @@ packages = [{ include = "monarch_py", from = "src" }]
 python = "^3.9"
 pydantic = "^2"
 curies = "<1"
-linkml = "^1.7.10"
+linkml = "1.8.3"
 prefixmaps = "^0.2"
 bioregistry = "^0.10.57"
 oaklib = ">=0.6.6"