Add closurizer expansion slots for qualifiers field

backend/src/monarch_py/datamodels/model.py

@@ -105,6 +105,19 @@ class Association(ConfiguredBaseModel):
     onset_qualifier: Optional[str] = Field(None)
     sex_qualifier: Optional[str] = Field(None)
     stage_qualifier: Optional[str] = Field(None)
+    qualifiers_label: Optional[str] = Field(None, description="""The name of the frequency_qualifier entity""")
+    qualifiers_namespace: Optional[str] = Field(
+        None, description="""The namespace/prefix of the frequency_qualifier entity"""
+    )
+    qualifiers_category: Optional[str] = Field(None, description="""The category of the frequency_qualifier entity""")
+    qualifiers_closure: Optional[List[str]] = Field(
+        default_factory=list,
+        description="""Field containing frequency_qualifier id and the ids of all of it's ancestors""",
+    )
+    qualifiers_closure_label: Optional[List[str]] = Field(
+        default_factory=list,
+        description="""Field containing frequency_qualifier name and the names of all of it's ancestors""",
+    )
     frequency_qualifier_label: Optional[str] = Field(None, description="""The name of the frequency_qualifier entity""")
     frequency_qualifier_namespace: Optional[str] = Field(
         None, description="""The namespace/prefix of the frequency_qualifier entity"""
@@ -265,6 +278,19 @@ class DirectionalAssociation(Association):
     onset_qualifier: Optional[str] = Field(None)
     sex_qualifier: Optional[str] = Field(None)
     stage_qualifier: Optional[str] = Field(None)
+    qualifiers_label: Optional[str] = Field(None, description="""The name of the frequency_qualifier entity""")
+    qualifiers_namespace: Optional[str] = Field(
+        None, description="""The namespace/prefix of the frequency_qualifier entity"""
+    )
+    qualifiers_category: Optional[str] = Field(None, description="""The category of the frequency_qualifier entity""")
+    qualifiers_closure: Optional[List[str]] = Field(
+        default_factory=list,
+        description="""Field containing frequency_qualifier id and the ids of all of it's ancestors""",
+    )
+    qualifiers_closure_label: Optional[List[str]] = Field(
+        default_factory=list,
+        description="""Field containing frequency_qualifier name and the names of all of it's ancestors""",
+    )
     frequency_qualifier_label: Optional[str] = Field(None, description="""The name of the frequency_qualifier entity""")
     frequency_qualifier_namespace: Optional[str] = Field(
         None, description="""The namespace/prefix of the frequency_qualifier entity"""

backend/src/monarch_py/datamodels/model.yaml

@@ -496,6 +496,24 @@ slots:
     is_a: in_taxon
   object_taxon_label:
     is_a: in_taxon_label
+
+  # this whole block will be renamed to qualifer_ after we bring in the next biolink model release
+  qualifiers_label:
+    is_a: name
+    description: The name of the frequency_qualifier entity
+  qualifiers_namespace:
+    range: string
+    description: The namespace/prefix of the frequency_qualifier entity
+  qualifiers_category:
+    is_a: category
+    description: The category of the frequency_qualifier entity
+  qualifiers_closure:
+    multivalued: true
+    description: Field containing frequency_qualifier id and the ids of all of it's ancestors
+  qualifiers_closure_label:
+    multivalued: true
+    description: Field containing frequency_qualifier name and the names of all of it's ancestors
+
   frequency_qualifier_label:
     is_a: name
     description: The name of the frequency_qualifier entity

frontend/src/api/model.ts

@@ -75,6 +75,16 @@ export interface Association {
     sex_qualifier?: string,
     stage_qualifier?: string,
     /** The name of the frequency_qualifier entity */
+    qualifiers_label?: string,
+    /** The namespace/prefix of the frequency_qualifier entity */
+    qualifiers_namespace?: string,
+    /** The category of the frequency_qualifier entity */
+    qualifiers_category?: string,
+    /** Field containing frequency_qualifier id and the ids of all of it's ancestors */
+    qualifiers_closure?: string[],
+    /** Field containing frequency_qualifier name and the names of all of it's ancestors */
+    qualifiers_closure_label?: string[],
+    /** The name of the frequency_qualifier entity */
     frequency_qualifier_label?: string,
     /** The namespace/prefix of the frequency_qualifier entity */
     frequency_qualifier_namespace?: string,
@@ -235,6 +245,16 @@ export interface DirectionalAssociation extends Association {
     sex_qualifier?: string,
     stage_qualifier?: string,
     /** The name of the frequency_qualifier entity */
+    qualifiers_label?: string,
+    /** The namespace/prefix of the frequency_qualifier entity */
+    qualifiers_namespace?: string,
+    /** The category of the frequency_qualifier entity */
+    qualifiers_category?: string,
+    /** Field containing frequency_qualifier id and the ids of all of it's ancestors */
+    qualifiers_closure?: string[],
+    /** Field containing frequency_qualifier name and the names of all of it's ancestors */
+    qualifiers_closure_label?: string[],
+    /** The name of the frequency_qualifier entity */
     frequency_qualifier_label?: string,
     /** The namespace/prefix of the frequency_qualifier entity */
     frequency_qualifier_namespace?: string,
@@ -481,7 +501,7 @@ export interface TermPairwiseSimilarity extends PairwiseSimilarity {
     cosine_similarity?: number,
     dice_similarity?: string,
     /** the geometric mean of the jaccard similarity and the information content */
-    phenodigm_score?: string,
+    phenodigm_score?: number,
 };
 /**
  * A simple pairwise similarity between two sets of concepts/terms