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add missing (possible) phenio node plain text list
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kevinschaper committed Jan 14, 2025
1 parent f022441 commit 2026d40
Showing 1 changed file with 7 additions and 0 deletions.
7 changes: 7 additions & 0 deletions scripts/generate_reports.sql
Original file line number Diff line number Diff line change
Expand Up @@ -64,6 +64,13 @@ copy (
where object not in (select id from nodes)
) to 'output/qc/missing_nodes.parquet';

copy (
select distinct missing_node
from 'output/qc/missing_nodes.parquet'
where split_part(missing_node, ':', 1) in (select distinct split_part(id,':',1) from nodes where provided_by = 'phenio_nodes')
order by missing_node
) to 'output/qc/missing_phenio_nodes.tsv' (format 'csv', delimiter E'\t', header false);

copy (
select edge_ingest,
edge_primary_knowledge_source,
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