merged main

monarch-initiative · Jul 1, 2024 · 8c06542 · 8c06542
2 parents 42f9411 + 543b64a
commit 8c06542
Showing 1 changed file with 9 additions and 8 deletions.
diff --git a/Jenkinsfile b/Jenkinsfile
@@ -1,5 +1,5 @@
 pipeline {
-    agent { label 'monarch-agent-large' }
+    agent { label 'monarch-agent-xlarge' }
     environment {
         HOME = "${env.WORKSPACE}"
         RELEASE = sh(script: "echo `date +%Y-%m-%d`", returnStdout: true).trim()
@@ -45,18 +45,19 @@ pipeline {
             }
         }
         stage('transform') {
+            //TODO: add --rdf flag back to produce individual rdf files
             steps {
-                sh 'poetry run ingest transform --all --log --rdf --write-metadata'
+                sh 'poetry run ingest transform --all --log --write-metadata'
                 sh '''
                    sed -i.bak 's@\r@@g' output/transform_output/*.tsv
                    rm output/transform_output/*.bak
                 '''
-                sh '''
-                   gunzip output/rdf/*.gz
-                   sed -i.bak 's@\\r@@g' output/rdf/*.nt
-                   rm output/rdf/*.bak
-                   gzip output/rdf/*.nt
-                '''
+//                sh '''
+//                   gunzip output/rdf/*.gz
+//                   sed -i.bak 's@\\r@@g' output/rdf/*.nt
+//                   rm output/rdf/*.bak
+//                   gzip output/rdf/*.nt
+//                 '''
             }
         }
         stage('merge') {