Merge pull request #541 from monarch-initiative/taxon-tokenizing

add additional entity field tokenizations
monarch-initiative · Dec 13, 2023 · b15ce72 · b15ce72
2 parents 2e6eb5e + 73cabb1
commit b15ce72
Show file tree

Hide file tree

Showing 2 changed files with 45 additions and 2 deletions.
diff --git a/scripts/add_entity_copyfields.sh b/scripts/add_entity_copyfields.sh
@@ -84,3 +84,45 @@ curl -X POST -H 'Content-type:application/json' --data-binary '{
     }
 }' http://localhost:8983/solr/entity/schema
 
+# taxon label
+
+curl -X POST -H 'Content-type:application/json' --data-binary '{
+    "add-copy-field": {
+        "source": "in_taxon_label",
+        "dest": "in_taxon_label_t"
+    }
+}' http://localhost:8983/solr/entity/schema
+
+curl -X POST -H 'Content-type:application/json' --data-binary '{
+    "add-copy-field": {
+        "source": "in_taxon_label",
+        "dest": "in_taxon_label_ac"
+    }
+}' http://localhost:8983/solr/entity/schema
+
+# taxon id
+
+curl -X POST -H 'Content-type:application/json' --data-binary '{
+    "add-copy-field": {
+        "source": "in_taxon",
+        "dest": "in_taxon_t"
+    }
+}' http://localhost:8983/solr/entity/schema
+
+# description
+
+curl -X POST -H 'Content-type:application/json' --data-binary '{
+    "add-copy-field": {
+        "source": "description",
+        "dest": "description_t"
+    }
+}' http://localhost:8983/solr/entity/schema
+
+# xref
+
+curl -X POST -H 'Content-type:application/json' --data-binary '{
+    "add-copy-field": {
+        "source": "xref",
+        "dest": "xref_t"
+    }
+}' http://localhost:8983/solr/entity/schema
diff --git a/scripts/load_solr.sh b/scripts/load_solr.sh
@@ -15,8 +15,9 @@ echo "Download the schema from monarch-py"
 # This replaces poetry run monarch schema > model.yaml and just awkwardly pulls from a github raw link
 
 # temporarily retrieve from a branch that has the sssom changes, they can't be merged until the new build runs
-curl -O https://raw.githubusercontent.com/monarch-initiative/monarch-app/add-deprecated-slot/backend/src/monarch_py/datamodels/model.yaml
-curl -O https://raw.githubusercontent.com/monarch-initiative/monarch-app/add-deprecated-slot/backend/src/monarch_py/datamodels/similarity.yaml
+
+curl -O https://raw.githubusercontent.com/monarch-initiative/monarch-app/main/backend/src/monarch_py/datamodels/model.yaml
+curl -O https://raw.githubusercontent.com/monarch-initiative/monarch-app/main/backend/src/monarch_py/datamodels/similarity.yaml
 
 echo "Starting the server"
 poetry run lsolr start-server