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add instructions to limit output to JSON
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@yaseminbridges
yaseminbridges committed Aug 27, 2024
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Expand Up @@ -57,6 +57,8 @@ The analysis configuration file (in this case: `preset-exome-analysis.yml`) shou

The whitelist paths for the hg19 and hg38 dbs need only be specified for Exomiser v13.3.0 and earlier (unless specifying your own whitelist), as Exomiser v14.0.0 now includes this in the db.

To save on diskspace we recommend limiting the Exomiser output to JSON, this can be specified by setting the `output_formats` field in the `config.yaml` to [JSON]

If using optional databases, such as REMM/CADD/local frequency the optional data input should look like so in the input
directory:

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