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api/pheval/cli/index.html

@@ -1856,13 +1856,13 @@ <h6 id="generate-stats-plot">generate-stats-plot</h6>
 <tr>
 <td><code>--variant-analysis</code> / <code>--no-variant-analysis</code></td>
 <td>boolean</td>
-<td>Specify analysis for variant prioritisation NOTE: This argument is mutually exclusive with  arguments: [disease_analysis, gene_analysis].</td>
+<td>Specify analysis for variant prioritisation NOTE: This argument is mutually exclusive with  arguments: [gene_analysis, disease_analysis].</td>
 <td><code>False</code></td>
 </tr>
 <tr>
 <td><code>--disease-analysis</code> / <code>--no-disease-analysis</code></td>
 <td>boolean</td>
-<td>Specify analysis for disease prioritisation NOTE: This argument is mutually exclusive with  arguments: [variant_analysis, gene_analysis].</td>
+<td>Specify analysis for disease prioritisation NOTE: This argument is mutually exclusive with  arguments: [gene_analysis, variant_analysis].</td>
 <td><code>False</code></td>
 </tr>
 <tr>

plugins/index.html

@@ -1226,6 +1226,26 @@ <h1>Plugins</h1>
 <td><a href="https://github.com/monarch-initiative/pheval.ontogpt">OntoGPT runner</a></td>
 <td></td>
 </tr>
+<tr>
+<td>ELDER</td>
+<td><a href="https://github.com/iQuxLE/ELDER">ELDER runner</a></td>
+<td></td>
+</tr>
+<tr>
+<td>MALCO</td>
+<td><a href="https://github.com/monarch-initiative/malco.git">MALCO runner</a></td>
+<td></td>
+</tr>
+<tr>
+<td>AI MARRVEL</td>
+<td><a href="https://github.com/yaseminbridges/pheval.ai_marrvel.git">AI MARRVEL runner</a></td>
+<td>The link to the original tool can be found <a href="https://github.com/LiuzLab/AI_MARRVEL.git">here</a></td>
+</tr>
+<tr>
+<td>OAK</td>
+<td><a href="https://github.com/monarch-initiative/pheval.oak.git">OAK runner</a></td>
+<td></td>
+</tr>
 </tbody>
 </table>