only copy phenopacket if it doesn't already exist at output directory

monarch-initiative · Jan 16, 2025 · e0bb68d · e0bb68d
1 parent d28e702
commit e0bb68d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/pheval/prepare/prepare_corpus.py b/src/pheval/prepare/prepare_corpus.py
@@ -92,4 +92,4 @@ def prepare_corpus(
             # if not updating phenopacket gene identifiers then copy phenopacket as is to output directory
             shutil.copy(
                 phenopacket_path, output_dir.joinpath(f"phenopackets/{phenopacket_path.name}")
-            )
+            ) if phenopacket_path != output_dir.joinpath(f"phenopackets/{phenopacket_path.name}") else None