Merge pull request #382 from monarch-initiative/381-prepare-corpus-co…

…py-error 381 prepare corpus copy error
monarch-initiative · Jan 16, 2025 · e783ceb · e783ceb
2 parents d28e702 + 7c40194
commit e783ceb
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diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pheval"
-version = "0.4.3"
+version = "0.4.4"
 description = ""
 authors = ["Yasemin Bridges <y.bridges@qmul.ac.uk>",
   "Julius Jacobsen <j.jacobsen@qmul.ac.uk>",

diff --git a/src/pheval/prepare/prepare_corpus.py b/src/pheval/prepare/prepare_corpus.py
@@ -90,6 +90,10 @@ def prepare_corpus(
             )
         else:
             # if not updating phenopacket gene identifiers then copy phenopacket as is to output directory
-            shutil.copy(
-                phenopacket_path, output_dir.joinpath(f"phenopackets/{phenopacket_path.name}")
+            (
+                shutil.copy(
+                    phenopacket_path, output_dir.joinpath(f"phenopackets/{phenopacket_path.name}")
+                )
+                if phenopacket_path != output_dir.joinpath(f"phenopackets/{phenopacket_path.name}")
+                else None
             )