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Fix type checking in extracted results #330

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merged 1 commit into from
May 13, 2024
Merged

Fix type checking in extracted results #330

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6 changes: 3 additions & 3 deletions src/pheval/post_processing/post_processing.py
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Original file line number Diff line number Diff line change
Expand Up @@ -375,11 +375,11 @@ def generate_pheval_result(
info_log.warning(f"No results found for {tool_result_path.name}")
return
ranked_pheval_result = _create_pheval_result(pheval_result, sort_order_str)
if all(isinstance(result, RankedPhEvalGeneResult) for result in ranked_pheval_result):
if all(isinstance(result, PhEvalGeneResult) for result in pheval_result):
_write_pheval_gene_result(ranked_pheval_result, output_dir, tool_result_path)
elif all(isinstance(result, RankedPhEvalVariantResult) for result in ranked_pheval_result):
elif all(isinstance(result, PhEvalVariantResult) for result in pheval_result):
_write_pheval_variant_result(ranked_pheval_result, output_dir, tool_result_path)
elif all(isinstance(result, RankedPhEvalDiseaseResult) for result in ranked_pheval_result):
elif all(isinstance(result, PhEvalDiseaseResult) for result in pheval_result):
_write_pheval_disease_result(ranked_pheval_result, output_dir, tool_result_path)
else:
raise ValueError("Results are not all of the same type.")
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