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@GMOD @genomearchitect @phenopackets @i5k @phoenixbio @ga4gh-cp @genophenoenvo @cancerDHC

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Starred repositories

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Data transformation framework for LinkML data models

Python 48 4 Updated Jan 14, 2025

Repository for the GA4GH phenopacket schema

Java 80 30 Updated Sep 19, 2024

Ontology Access Kit: A python library and command line application for working with ontologies

Python 129 29 Updated Oct 22, 2024

An instance of KG Hub to produce a knowledge graph for COVID-19 response.

Python 80 26 Updated Aug 3, 2023

An ontology of cell types

Makefile 153 50 Updated Jan 20, 2025

Simple Standard for Sharing Ontology Mappings

Python 158 24 Updated Jan 10, 2025

Schema and generated objects for biolink data model and upper ontology

Python 182 74 Updated Jan 17, 2025

A Tool to Annotate and Prioritize Exome Variants

Java 206 55 Updated Dec 19, 2024

Bootstrap an OBO Library ontology

Jinja 235 53 Updated Jan 20, 2025

LLM-based ontological extraction tools, including SPIRES

Jupyter Notebook 639 86 Updated Dec 20, 2024

LLM retrieval augmented generation agent for the Monarch Knowledge graph.

Python 20 Updated Jan 14, 2025

Linked Open Data Modeling Language

Python 335 107 Updated Jan 20, 2025

LLM-driven curation assist tool

Jupyter Notebook 75 12 Updated Jan 16, 2025

SQL and SQLite builds of OWL ontologies

Python 41 3 Updated Aug 14, 2024

Medical action ontology

HTML 54 4 Updated Dec 23, 2024

Repository for representing genotypes and their association with phenotypes

Makefile 18 6 Updated Oct 12, 2023

OBO Library edition of NCIt

Makefile 23 8 Updated May 7, 2024

Modular environmental exposures ontology

Makefile 32 18 Updated Mar 13, 2024

Ontology for representing scientific evidence and provenance information

Makefile 50 11 Updated Jul 26, 2024

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

Makefile 78 18 Updated Jan 18, 2025

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

Emacs Lisp 135 30 Updated Jan 20, 2025

Mondo Disease Ontology

Jupyter Notebook 239 54 Updated Jan 20, 2025

python library for working with ontologies and ontology associations

Python 123 31 Updated Dec 16, 2024

Source ontology files for the Gene Ontology

Makefile 225 40 Updated Jan 20, 2025

ROBOT is an OBO Tool

Java 265 74 Updated Dec 13, 2024

Ontology for the description of human clinical features

Makefile 298 53 Updated Jan 16, 2025

Web-component for creating & showing VSM-sentences — Visual Syntax Method

JavaScript 30 1 Updated Apr 9, 2021

AJAX Genome Browser

JavaScript 13 2 Updated Sep 19, 2013
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