Merge branch 'main' into submodulev3

.github/workflows/assign.yml

@@ -20,5 +20,8 @@ jobs:
     steps:
       - run: |
           echo "Assigning issue ${{ github.event.issue.number }} to ${{ github.event.comment.user.login }}"
-          curl -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" -d '{"assignees": ["${{ github.event.comment.user.login }}"]}' https://api.github.com/repos/${{ github.repository }}/issues/${{ github.event.issue.number }}/assignees
-          curl -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" -X "DELETE" https://api.github.com/repos/${{ github.repository }}/issues/${{ github.event.issue.number }}/labels/help%20wanted
+          gh issue edit $ISSUE --add-assignee ${{ github.event.comment.user.login }}
+          gh issue edit $ISSUE --remove-label "help wanted"
+        env:
+          GH_TOKEN: ${{ github.token }}
+          ISSUE: ${{ github.event.issue.html_url }}

.github/workflows/unassign.yml

@@ -18,4 +18,7 @@ jobs:
         if: github.event.issue.state == 'open'
         run: |
           echo "Marking issue ${{ github.event.issue.number }} as help wanted"
-          curl -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" -d '{"labels": ["help wanted"]}' https://api.github.com/repos/${{ github.repository }}/issues/${{ github.event.issue.number }}/labels
+          gh issue edit $ISSUE --add-label "help wanted"
+        env:
+          GH_TOKEN: ${{ github.token }}
+          ISSUE: ${{ github.event.issue.html_url }}

.gitignore

@@ -13,6 +13,7 @@ sklearn/**/*.html
 
 dist/
 MANIFEST
+doc/sg_execution_times.rst
 doc/_build/
 doc/auto_examples/
 doc/modules/generated/

azure-pipelines.yml

@@ -231,7 +231,7 @@ jobs:
         not(contains(dependencies['git_commit']['outputs']['commit.message'], '[ci skip]'))
       )
     matrix:
-      # Linux + Python 3.9 build with OpenBLAS
+      # Linux + Python 3.9 build with OpenBLAS and without pandas
       pymin_conda_defaults_openblas:
         DISTRIB: 'conda'
         LOCK_FILE: './build_tools/azure/pymin_conda_defaults_openblas_linux-64_conda.lock'

build_tools/azure/debian_atlas_32bit_lock.txt

@@ -4,9 +4,9 @@
 #
 #    pip-compile --output-file=build_tools/azure/debian_atlas_32bit_lock.txt build_tools/azure/debian_atlas_32bit_requirements.txt
 #
-attrs==23.1.0
+attrs==23.2.0
     # via pytest
-coverage==7.3.2
+coverage==7.4.0
     # via pytest-cov
 cython==0.29.33
     # via -r build_tools/azure/debian_atlas_32bit_requirements.txt

build_tools/azure/pylatest_conda_forge_mkl_linux-64_conda.lock

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 7aa55d66dfbd0f6267a9aff8c750d1e9f42cd339726c8f9c4d1299341b064849
+# input_hash: 0e751f4212c4e51710aad471314a8b385a5e12fe3536c2a766f949da61eabb88
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.11.17-hbcca054_0.conda#01ffc8d36f9eba0ce0b3c1955fa780ee
@@ -11,7 +11,7 @@ https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_1.co
 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda#7aca3059a1729aa76c597603f10b0dd3
 https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_3.conda#937eaed008f6bf2191c5fe76f87755e9
 https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.11-4_cp311.conda#d786502c97404c94d7d58d258a445a65
-https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda#939e3e74d8be4dac89ce83b20de2492a
+https://conda.anaconda.org/conda-forge/noarch/tzdata-2023d-h0c530f3_0.conda#8dee24b8be2d9ff81e7bd4d7d97ff1b0
 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29
 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2#fee5683a3f04bd15cbd8318b096a27ab
 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_kmp_llvm.tar.bz2#562b26ba2e19059551a811e72ab7f793
@@ -20,7 +20,7 @@ https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.10-hd590300_0.conda
 https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2#d9c69a24ad678ffce24c6543a0176b00
 https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.0-hd590300_0.conda#71b89db63b5b504e7afc8ad901172e1e
 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4
-https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.23.0-hd590300_0.conda#d459949bc10f64dee1595c176c2e6291
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.24.0-hd590300_0.conda#f5842b88e9cbfa177abfaeacd457a45d
 https://conda.anaconda.org/conda-forge/linux-64/gettext-0.21.1-h27087fc_0.tar.bz2#14947d8770185e5153fdd04d4673ed37
 https://conda.anaconda.org/conda-forge/linux-64/gflags-2.2.2-he1b5a44_1004.tar.bz2#cddaf2c63ea4a5901cf09524c490ecdc
 https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h58526e2_1001.tar.bz2#8c54672728e8ec6aa6db90cf2806d220
@@ -36,7 +36,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172b
 https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda#6305a3dd2752c76335295da4e581f2fd
 https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
 https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_3.conda#c714d905cdfa0e70200f68b80cc04764
-https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_1.conda#4b06b43d0eca61db2899e4d7a289c302
+https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_2.conda#d66573916ffcf376178462f1b61c941e
 https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda#ea25936bb4080d843790b586850f82b8
 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
 https://conda.anaconda.org/conda-forge/linux-64/libnuma-2.0.16-h0b41bf4_1.conda#28bfe2cb11357ccc5be21101a6b7ce86
@@ -45,13 +45,14 @@ https://conda.anaconda.org/conda-forge/linux-64/libopus-1.3.1-h7f98852_1.tar.bz2
 https://conda.anaconda.org/conda-forge/linux-64/libutf8proc-2.8.0-h166bdaf_0.tar.bz2#ede4266dc02e875fe1ea77b25dd43747
 https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
 https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.3.2-hd590300_0.conda#30de3fd9b3b602f7473f30e684eeea8c
+https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
 https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad
 https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0
 https://conda.anaconda.org/conda-forge/linux-64/mpg123-1.32.3-h59595ed_0.conda#bdadff838d5437aea83607ced8b37f75
 https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-h59595ed_2.conda#7dbaa197d7ba6032caf7ae7f32c1efa0
 https://conda.anaconda.org/conda-forge/linux-64/nspr-4.35-h27087fc_0.conda#da0ec11a6454ae19bff5b02ed881a2b1
 https://conda.anaconda.org/conda-forge/linux-64/openssl-3.2.0-hd590300_1.conda#603827b39ea2b835268adb8c821b8570
-https://conda.anaconda.org/conda-forge/linux-64/pixman-0.42.2-h59595ed_0.conda#700edd63ccd5fc66b70b1c028cea9a68
+https://conda.anaconda.org/conda-forge/linux-64/pixman-0.43.0-h59595ed_0.conda#6b4b43013628634b6cfdee6b74fd696b
 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036
 https://conda.anaconda.org/conda-forge/linux-64/rdma-core-28.9-h59595ed_1.conda#aeffb7c06b5f65e55e6c637408dc4100
 https://conda.anaconda.org/conda-forge/linux-64/re2-2023.03.02-h8c504da_0.conda#206f8fa808748f6e90599c3368a1114e
@@ -112,9 +113,9 @@ https://conda.anaconda.org/conda-forge/linux-64/libthrift-0.18.1-h8fd135c_2.cond
 https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.6.0-ha9c0a0a_2.conda#55ed21669b2015f77c180feb1dd41930
 https://conda.anaconda.org/conda-forge/linux-64/llvm-openmp-17.0.6-h4dfa4b3_0.conda#c1665f9c1c9f6c93d8b4e492a6a39056
 https://conda.anaconda.org/conda-forge/linux-64/mysql-libs-8.0.33-hca2cd23_6.conda#e87530d1b12dd7f4e0f856dc07358d60
-https://conda.anaconda.org/conda-forge/linux-64/nss-3.95-h1d7d5a4_0.conda#d3a8067adcc45a923f4b1987c91d69da
+https://conda.anaconda.org/conda-forge/linux-64/nss-3.96-h1d7d5a4_0.conda#1c8f8b8eb041ecd54053fc4b6ad57957
 https://conda.anaconda.org/conda-forge/linux-64/orc-1.9.0-h2f23424_1.conda#9571eb3eb0f7fe8b59956a7786babbcd
-https://conda.anaconda.org/conda-forge/linux-64/python-3.11.6-hab00c5b_0_cpython.conda#b0dfbe2fcbfdb097d321bfd50ecddab1
+https://conda.anaconda.org/conda-forge/linux-64/python-3.11.7-hab00c5b_1_cpython.conda#27cf681282c11dba7b0b1fd266e8f289
 https://conda.anaconda.org/conda-forge/linux-64/xcb-util-0.4.0-hd590300_1.conda#9bfac7ccd94d54fd21a0501296d60424
 https://conda.anaconda.org/conda-forge/linux-64/xcb-util-keysyms-0.4.0-h8ee46fc_1.conda#632413adcd8bc16b515cab87a2932913
 https://conda.anaconda.org/conda-forge/linux-64/xcb-util-renderutil-0.3.9-hd590300_1.conda#e995b155d938b6779da6ace6c6b13816
@@ -128,7 +129,7 @@ https://conda.anaconda.org/conda-forge/linux-64/ccache-4.8.1-h1fcd64f_0.conda#fd
 https://conda.anaconda.org/conda-forge/noarch/certifi-2023.11.17-pyhd8ed1ab_0.conda#2011bcf45376341dd1d690263fdbc789
 https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_0.tar.bz2#3faab06a954c2a04039983f2c4a50d99
 https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_0.conda#5cd86562580f274031ede6aa6aa24441
-https://conda.anaconda.org/conda-forge/linux-64/cython-3.0.6-py311hb755f60_0.conda#88cc84238dda72e11285d9cfcbe43e51
+https://conda.anaconda.org/conda-forge/linux-64/cython-3.0.7-py311hb755f60_0.conda#97b12677eec6c2fd23c7867db1c7a87d
 https://conda.anaconda.org/conda-forge/linux-64/dbus-1.13.6-h5008d03_3.tar.bz2#ecfff944ba3960ecb334b9a2663d708d
 https://conda.anaconda.org/conda-forge/noarch/exceptiongroup-1.2.0-pyhd8ed1ab_0.conda#f6c211fee3c98229652b60a9a42ef363
 https://conda.anaconda.org/conda-forge/noarch/execnet-2.0.2-pyhd8ed1ab_0.conda#67de0d8241e1060a479e3c37793e26f9
@@ -147,11 +148,10 @@ https://conda.anaconda.org/conda-forge/linux-64/openjpeg-2.5.0-h488ebb8_3.conda#
 https://conda.anaconda.org/conda-forge/noarch/packaging-23.2-pyhd8ed1ab_0.conda#79002079284aa895f883c6b7f3f88fd6
 https://conda.anaconda.org/conda-forge/noarch/pluggy-1.3.0-pyhd8ed1ab_0.conda#2390bd10bed1f3fdc7a537fb5a447d8d
 https://conda.anaconda.org/conda-forge/noarch/ply-3.11-py_1.tar.bz2#7205635cd71531943440fbfe3b6b5727
-https://conda.anaconda.org/conda-forge/noarch/py-1.11.0-pyh6c4a22f_0.tar.bz2#b4613d7e7a493916d867842a6a148054
 https://conda.anaconda.org/conda-forge/noarch/pyparsing-3.1.1-pyhd8ed1ab_0.conda#176f7d56f0cfe9008bdf1bccd7de02fb
-https://conda.anaconda.org/conda-forge/noarch/python-tzdata-2023.3-pyhd8ed1ab_0.conda#2590495f608a63625e165915fb4e2e34
+https://conda.anaconda.org/conda-forge/noarch/python-tzdata-2023.4-pyhd8ed1ab_0.conda#c79cacf8a06a51552fc651652f170208
 https://conda.anaconda.org/conda-forge/noarch/pytz-2023.3.post1-pyhd8ed1ab_0.conda#c93346b446cd08c169d843ae5fc0da97
-https://conda.anaconda.org/conda-forge/noarch/setuptools-68.2.2-pyhd8ed1ab_0.conda#fc2166155db840c634a1291a5c35a709
+https://conda.anaconda.org/conda-forge/noarch/setuptools-69.0.3-pyhd8ed1ab_0.conda#40695fdfd15a92121ed2922900d0308b
 https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2#e5f25f8dbc060e9a8d912e432202afc2
 https://conda.anaconda.org/conda-forge/linux-64/tbb-2021.11.0-h00ab1b0_0.conda#fde515afbbe6e36eb4564965c20b1058
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@@ -166,39 +166,38 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-libxrender-0.9.11-hd590300_
 https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.7.3-h28f7589_1.conda#97503d3e565004697f1651753aa95b9e
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 https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-h3faef2a_0.conda#f907bb958910dc404647326ca80c263e
-https://conda.anaconda.org/conda-forge/linux-64/coverage-7.3.2-py311h459d7ec_0.conda#7b3145fed7adc7c63a0e08f6f29f5480
-https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.46.0-py311h459d7ec_0.conda#a14114f70e23f7fd5ab9941fec45b095
+https://conda.anaconda.org/conda-forge/linux-64/coverage-7.4.0-py311h459d7ec_0.conda#bbaf0376ed2f153a90f167ad908da3d0
+https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.47.0-py311h459d7ec_0.conda#f7ec87c448f714f53519fe9c87ba1747
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+https://conda.anaconda.org/conda-forge/linux-64/gst-plugins-base-1.22.8-h8e1006c_1.conda#3926dab94fe06d88ade0e716d77b8cf8
 https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-16_linux64_mkl.tar.bz2#361bf757b95488de76c4f123805742d3
 https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-16_linux64_mkl.tar.bz2#a2f166748917d6d6e4707841ca1f519e
-https://conda.anaconda.org/conda-forge/noarch/pytest-xdist-2.5.0-pyhd8ed1ab_0.tar.bz2#1fdd1f3baccf0deb647385c677a1a48e
 https://conda.anaconda.org/conda-forge/linux-64/aws-sdk-cpp-1.10.57-h85b1a90_19.conda#0605d3d60857fc07bd6a11e878fe0f08
-https://conda.anaconda.org/conda-forge/linux-64/numpy-1.26.2-py311h64a7726_0.conda#fd2f142dcd680413b5ede5d0fb799205
+https://conda.anaconda.org/conda-forge/linux-64/numpy-1.26.3-py311h64a7726_0.conda#231eef4f33640338f64ef9ab690ba08d
 https://conda.anaconda.org/conda-forge/linux-64/qt-main-5.15.8-h82b777d_17.conda#4f01e33dbb406085a16a2813ab067e95
 https://conda.anaconda.org/conda-forge/linux-64/contourpy-1.2.0-py311h9547e67_0.conda#40828c5b36ef52433e21f89943e09f33
 https://conda.anaconda.org/conda-forge/linux-64/libarrow-12.0.1-hb87d912_8_cpu.conda#3f3b11398fe79b578e3c44dd00a44e4a
 https://conda.anaconda.org/conda-forge/linux-64/pandas-2.1.4-py311h320fe9a_0.conda#e44ccb61b6621bf3f8053ae66eba7397
-https://conda.anaconda.org/conda-forge/linux-64/polars-0.19.19-py311hf926cbc_0.conda#877bb336395d1c8bd3e8fc736dd27e7a
+https://conda.anaconda.org/conda-forge/linux-64/polars-0.20.3-py311h2bb2bab_1.conda#dfde94fef0b419cad560023fa277ef9e
 https://conda.anaconda.org/conda-forge/linux-64/pyqt-5.15.9-py311hf0fb5b6_5.conda#ec7e45bc76d9d0b69a74a2075932b8e8
 https://conda.anaconda.org/conda-forge/linux-64/pytorch-1.13.1-cpu_py311h410fd25_1.conda#ddd2fadddf89e3dc3d541a2537fce010
 https://conda.anaconda.org/conda-forge/linux-64/scipy-1.11.4-py311h64a7726_0.conda#9ac5334f1b5ed072d3dbc342503d7868

build_tools/azure/pylatest_conda_forge_mkl_linux-64_environment.yml

@@ -15,7 +15,7 @@ dependencies:
   - pandas
   - pyamg
   - pytest
-  - pytest-xdist=2.5.0
+  - pytest-xdist
   - pillow
   - setuptools
   - pytest-cov