update the version, add logs and update license [ci skip]

nextflow-io · Mar 3, 2024 · ea0e1e3 · ea0e1e3
1 parent 5b7b995
commit ea0e1e3
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Showing 8 changed files with 58 additions and 10 deletions.
diff --git a/gradle.properties b/gradle.properties
@@ -1 +1 @@
-version=0.0.2-rc1
+version=0.0.2
diff --git a/plugins/build.gradle b/plugins/build.gradle
@@ -1,8 +1,7 @@
 /*
+ * Copyright 2023-, Stellenbosch University, South Africa
  * Copyright 2024, Evaluacion y Desarrollo de Negocios, Spain
- * Copyright 2023, Stellenbosch University, South Africa
- * Copyright 2022, Center for Medical Genetics, Ghent
- *
+
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
  * You may obtain a copy of the License at

diff --git a/plugins/nf-nomad/src/main/nextflow/nomad/NomadConfig.groovy b/plugins/nf-nomad/src/main/nextflow/nomad/NomadConfig.groovy
@@ -1,6 +1,6 @@
 /*
- * Copyright 2023, Stellenbosch University, South Africa
- * Copyright 2022, Center for Medical Genetics, Ghent
+ * Copyright 2023-, Stellenbosch University, South Africa
+ * Copyright 2024, Evaluacion y Desarrollo de Negocios, Spain
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.

diff --git a/plugins/nf-nomad/src/main/nextflow/nomad/executor/NomadExecutor.groovy b/plugins/nf-nomad/src/main/nextflow/nomad/executor/NomadExecutor.groovy
@@ -1,4 +1,19 @@
-
+/*
+ * Copyright 2023-, Stellenbosch University, South Africa
+ * Copyright 2024, Evaluacion y Desarrollo de Negocios, Spain
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package nextflow.nomad.executor
 
 import groovy.transform.CompileStatic

diff --git a/plugins/nf-nomad/src/main/nextflow/nomad/executor/NomadScriptLauncher.groovy b/plugins/nf-nomad/src/main/nextflow/nomad/executor/NomadScriptLauncher.groovy
@@ -1,3 +1,20 @@
+/*
+ * Copyright 2023-, Stellenbosch University, South Africa
+ * Copyright 2024, Evaluacion y Desarrollo de Negocios, Spain
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
 package nextflow.nomad.executor
 
 

diff --git a/plugins/nf-nomad/src/main/nextflow/nomad/executor/NomadService.groovy b/plugins/nf-nomad/src/main/nextflow/nomad/executor/NomadService.groovy
@@ -1,7 +1,6 @@
 /*
+ * Copyright 2023-, Stellenbosch University, South Africa
  * Copyright 2024, Evaluacion y Desarrollo de Negocios, Spain
- * Copyright 2023, Stellenbosch University, South Africa
- * Copyright 2022, Center for Medical Genetics, Ghent
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
@@ -52,6 +51,7 @@ class NomadService implements Closeable{
         ApiClient apiClient = new ApiClient()
         apiClient.basePath = config.clientOpts.address
         if( config.clientOpts.token ){
+            log.debug "[NOMAD BATCH] Creating Nomad connection using token: ${config.clientOpts.token?.substring(0,5)}.."
             apiClient.apiKey = config.clientOpts.token
         }
         this.jobsApi = new JobsApi(apiClient);

diff --git a/plugins/nf-nomad/src/main/nextflow/nomad/executor/NomadTaskHandler.groovy b/plugins/nf-nomad/src/main/nextflow/nomad/executor/NomadTaskHandler.groovy
@@ -1,4 +1,19 @@
-
+/*
+ * Copyright 2023-, Stellenbosch University, South Africa
+ * Copyright 2024, Evaluacion y Desarrollo de Negocios, Spain
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package nextflow.nomad.executor
 
 

diff --git a/plugins/nf-nomad/src/test/nextflow/nomad/NomadDSLSpec.groovy b/plugins/nf-nomad/src/test/nextflow/nomad/NomadDSLSpec.groovy
@@ -1,4 +1,6 @@
 /*
+ * Copyright 2023-, Stellenbosch University, South Africa
+ * Copyright 2024, Evaluacion y Desarrollo de Negocios, Spain*
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.