Added citations to utils_nfcore_detaxizer_pipeline/main.nf #18
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d4straub
approved these changes
Mar 5, 2024
| "Kraken2 (Wood et al. 2019),", | ||
| !params["skip_blastn"] ? "BLAST (Altschul et al. 1990)," : "", | ||
| !params["skip_blastn"] | params["enable_filter"] ? "seqkit (Shen et al. 2016)," : "", | ||
| "fastp (Chen et al. 2018)", |
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you could roughly keep the sequence of the tools, i.e. to put fastp right after FastQC or such.
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PR checklist
nf-core lint).nf-test test main.nf.test -profile test,docker).Added citations to the subworkflow utils_nfcore_detaxizer_pipeline/main.nf