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Updated description in manifest #20

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merged 2 commits into from
Mar 8, 2024
Merged

Updated description in manifest #20

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c43517c
edited manifest
jannikseidelQBiC Mar 7, 2024
a3ebd5c
fixed email_template.html
jannikseidelQBiC Mar 7, 2024
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2 changes: 1 addition & 1 deletion assets/email_template.html
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Expand Up @@ -4,7 +4,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">

<meta name="description" content="nf-core/detaxizer: A pipeline to identify (and remove) certain sequences from raw genomic data using kraken2 and blast. Default taxon to identify (and remove) is Homo. Removal is optional.">
<meta name="description" content="nf-core/detaxizer: A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.">
<title>nf-core/detaxizer Pipeline Report</title>
</head>
<body>
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -266,7 +266,7 @@ manifest {
name = 'nf-core/detaxizer'
author = """Jannik Seidel"""
homePage = 'https://github.com/nf-core/detaxizer'
description = """A pipeline to identify (and remove) certain sequences from raw genomic data using kraken2 and blast. Default taxon to identify (and remove) is Homo. Removal is optional."""
description = """A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional."""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '1.0dev'
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8 changes: 4 additions & 4 deletions nextflow_schema.json
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Expand Up @@ -2,7 +2,7 @@
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://raw.githubusercontent.com/nf-core/detaxizer/master/nextflow_schema.json",
"title": "nf-core/detaxizer pipeline parameters",
"description": "A pipeline to identify (and remove) certain sequences from raw genomic data using kraken2 and blast. Default taxon to identify (and remove) is Homo. Removal is optional.",
"description": "A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.",
"type": "object",
"definitions": {
"workflow_parameters": {
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},
"cutoff_unclassified": {
"type": "number",
"default": 0,
"default": 0.0,
"description": "Ratio per read of assigned to tax2filter k-mers to unclassified k-mers.",
"minimum": 0,
"maximum": 1,
Expand All @@ -93,7 +93,7 @@
"properties": {
"blast_coverage": {
"type": "number",
"default": 40,
"default": 40.0,
"description": "Coverage is the percentage of the query sequence which can be found in the alignments of the sequence match. It can be used to fine-tune the validation step."
},
"blast_evalue": {
Expand All @@ -103,7 +103,7 @@
},
"blast_identity": {
"type": "number",
"default": 40,
"default": 40.0,
"description": "Identity is the percentage of the exact matches in the query and the sequence found in the database. The parameter can be used to fine-tune the validation step."
}
}
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