Merge remote-tracking branch 'origin/dev' into dev

nf-core · Jan 11, 2023 · 416e0ff · 416e0ff
2 parents 86be6fb + 83964b6
commit 416e0ff
Showing 1 changed file with 6 additions and 12 deletions.
diff --git a/workflows/isoseq.nf b/workflows/isoseq.nf
@@ -137,18 +137,12 @@ workflow ISOSEQ {
         .groupTuple()
         .set { ch_tcollapse }
 
-    if (params.capped == true) {
-        GSTAMA_FILELIST( // Generate the filelist file needed by TAMA merge
-        ch_tcollapse,
-        Channel.value("capped"),
-        Channel.value("1,1,1"))
-    }
-    else {
-        GSTAMA_FILELIST( // Generate the filelist file needed by TAMA merge
-        ch_tcollapse,
-        Channel.value("no_cap"),
-        Channel.value("1,1,1"))
-    }
+    cap_value = params.capped == true ? Channel.value("capped") : Channel.value("no_cap")
+
+    GSTAMA_FILELIST( // Generate the filelist file needed by TAMA merge
+    ch_tcollapse,
+    cap_value,
+    Channel.value("1,1,1"))
 
     ch_tcollapse // Synchronized bed files produced by TAMA collapse with file list file generated by GSTAMA_FILELIST
         .join( GSTAMA_FILELIST.out.tsv )