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58 Open 253 Closed
58 Open 253 Closed
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Issues list

Enable ext.args to send customized parameters to QUAST modules enhancement New feature or request
#748 opened Jan 20, 2025 by amizeranschi
2
Compress FASTA files with contigs and scaffolds using bgzip instead of gzip, to enable file indexing enhancement New feature or request
#746 opened Jan 19, 2025 by amizeranschi
5
Add new features and Improvement to nf-core/mag: Trimmomatic, contigs param for binning, new concoct default params enhancement New feature or request
#744 opened Jan 16, 2025 by Pranjal-Bioinfo
1
@Pranjal-Bioinfo
1
Ensure unique contig names across assemblies, for chaining pipeline with magmap enhancement New feature or request
#742 opened Jan 6, 2025 by amizeranschi
Update multiqc config to support new modules good first issue Good for newcomers
#739 opened Dec 22, 2024 by jfy133
For unbinned contigs, run CAT in "contig mode" (CAT_pack contigs) instead of "bin mode" (CAT_pack bins) enhancement New feature or request
#735 opened Dec 17, 2024 by amizeranschi
1
Create a summary report enhancement New feature or request
#728 opened Dec 10, 2024 by dialvarezs
1
Consider using Taxometer (From VAMB) for taxonomic classification of metagenomic contigs enhancement New feature or request
#722 opened Dec 3, 2024 by jfy133
Consider binette as alternative bin refinement tool
#714 opened Nov 13, 2024 by jfy133
Be able to run multiple bin QC metrics enhancement New feature or request
#713 opened Nov 7, 2024 by harper357
@dialvarezs
12
--host_fasta_bowtie2index path taken for bowtie -S output file bug Something isn't working
#694 opened Oct 16, 2024 by MeriamOs
@jfy133
2
Optional skipping of short-read input to Filtlong for large datasets enhancement New feature or request
#691 opened Oct 14, 2024 by ddomman
2
Generate taxprofiler samplesheet from mag
#687 opened Oct 10, 2024 by vagkaratzas
1
@vagkaratzas
Create a samplesheet for funcscan enhancement New feature or request
#686 opened Oct 10, 2024 by jasmezz
@jasmezz
1
Consider metaMDBG as another long-read assembler enhancement New feature or request
#662 opened Sep 5, 2024 by jfy133
@muabnezor
1
Add (meta)Flye for long-read only assembly enhancement New feature or request
#659 opened Sep 5, 2024 by jfy133
@muabnezor
Consider CarpeDeam for (ancient DNA) damage aware assembler enhancement New feature or request
#650 opened Aug 12, 2024 by jfy133
Add module pyrodigal enhancement New feature or request
#624 opened Jun 3, 2024 by jasmezz
Enter at postbinning stage enhancement New feature or request
#623 opened Jun 3, 2024 by prototaxites
9
Allow Prodigal to create a gbk file instead of the gff enhancement New feature or request
#622 opened Jun 3, 2024 by amizeranschi
CAT_DB process has harcoded CAT subdirectory names bug Something isn't working
#611 opened Apr 18, 2024 by maxibor
@jfy133
2
Genome taxnomic classification with Sourmash enhancement New feature or request
#609 opened Apr 5, 2024 by prototaxites
3
Improve documentation on the effects of completeness/contamination filters enhancement New feature or request
#606 opened Mar 22, 2024 by jfy133
add diamond support to mag WIP Work in progress
#604 opened Mar 19, 2024 by MatthewJM96
@MatthewJM96
Error in executing PROKKA
#601 opened Mar 13, 2024 by anugos
9
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