Run nf-test

change stageInMode to copy and update module #2721

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Run time

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Job	Run time
conda \| 1	1m 44s
conda \| 2	1m 43s
conda \| 3	1m 43s
conda \| 4	1m 51s
conda \| 5	1m 42s
docker_self_hosted \| 1	4m 27s
docker_self_hosted \| 2	4m 32s
docker_self_hosted \| 3	4m 28s
docker_self_hosted \| 4	3m 48s
docker_self_hosted \| 5	3m 49s
singularity \| 1	7m 32s
singularity \| 2	7m 36s
singularity \| 3	7m 42s
singularity \| 4	8m 1s
singularity \| 5	7m 56s
	1h 8m 34s