Update seqkit to version 2.9.0 #2146
heuermhlint.yml
on: pull_request
nf-core-changes
7s
pre-commit
10s
Matrix: nf-core lint modules
confirm-pass
0s
Annotations
63 errors and 4 warnings
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nf-core lint modules (mmseqs/search)
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nf-core lint modules (mmseqs/search)
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nf-core lint modules (mmseqs/taxonomy)
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nf-core lint modules (mmseqs/taxonomy)
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nf-core lint modules (seqkit/tab2fx)
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nf-core lint modules (seqkit/tab2fx)
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nf-core lint modules (seqkit/translate)
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nf-core lint modules (shinyngs/staticdifferential)
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nf-core lint modules (shinyngs/validatefomcomponents)
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nf-core lint modules (gridss/somaticfilter)
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nf-core lint modules (gridss/somaticfilter)
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nf-core lint modules (shinyngs/staticexploratory)
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nf-core lint modules (seqkit/rmdup)
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nf-core lint modules (seqkit/rmdup)
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nf-core lint modules (shinyngs/app)
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nf-core lint modules (deepvariant/rundeepvariant)
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nf-core lint modules (deepvariant/rundeepvariant)
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nf-core lint modules (gridss/gridss)
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nf-core lint modules (gridss/gridss)
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nf-core lint modules (custom/tabulartogseacls)
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nf-core lint modules (custom/tabulartogseacls)
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nf-core lint modules (krakenuniq/build)
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nf-core lint modules (krakenuniq/build)
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nf-core lint modules (mmseqs/createindex)
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nf-core lint modules (mmseqs/createindex)
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nf-core lint modules (krakenuniq/download)
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nf-core lint modules (krakenuniq/download)
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nf-core lint modules (seqkit/sliding)
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nf-core lint modules (seqkit/sliding)
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nf-core lint modules (seqkit/sort)
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nf-core lint modules (seqkit/fq2fa)
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nf-core lint modules (seqkit/sort)
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nf-core lint modules (seqkit/fq2fa)
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nf-core lint modules (custom/tabulartogseagct)
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nf-core lint modules (custom/tabulartogseagct)
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nf-core lint modules (deepvariant/vcfstatsreport)
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nf-core lint modules (deepvariant/vcfstatsreport)
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nf-core lint modules (seqkit/stats)
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nf-core lint modules (seqkit/stats)
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nf-core lint modules (seqkit/split2)
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nf-core lint modules (seqkit/split2)
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nf-core lint modules (mmseqs/createtsv)
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nf-core lint modules (mmseqs/createtsv)
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nf-core lint modules (gridss/generateponbedpe)
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nf-core lint modules (gridss/generateponbedpe)
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nf-core lint modules (mmseqs/easysearch)
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nf-core lint modules (mmseqs/easysearch)
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nf-core lint modules (kaiju/mkfmi)
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nf-core lint modules (kaiju/mkfmi)
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nf-core lint modules (seqkit/concat)
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nf-core lint modules (seqkit/concat)
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nf-core lint modules (seqkit/seq)
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nf-core lint modules (seqkit/seq)
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nf-core lint modules (seqkit/replace)
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nf-core lint modules (seqkit/replace)
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nf-core lint modules (seqkit/fx2tab)
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nf-core lint modules (seqkit/grep)
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nf-core lint modules (seqkit/fx2tab)
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nf-core lint modules (seqkit/grep)
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nf-core lint modules (custom/matrixfilter)
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nf-core lint modules (custom/matrixfilter)
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nf-core lint modules (seqkit/pair)
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nf-core lint modules (seqkit/pair)
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nf-core-changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pre-commit
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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