Add CI to build mulled containers with Wave #83
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Wave | |
| # When environment.yml is changed | |
| on: | |
| pull_request: | |
| paths: | |
| - "**/environment.yml" | |
| env: | |
| WAVE_VER: "1.4.1" | |
| jobs: | |
| gen-matrix: | |
| name: generate-matrix | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29 # v4 | |
| - name: Calculate file differences | |
| id: diff | |
| uses: tj-actions/changed-files@v44 | |
| with: | |
| json: true | |
| quotepath: false | |
| # TODO Add Dockerfiles | |
| files: | | |
| modules/**/environment.yml | |
| - name: Debug | |
| run: echo ${{ steps.diff.outputs.all_changed_files }} | |
| - id: set-matrix | |
| run: echo "matrix={\"profile\":[\"docker\", \"singularity\"],\"files\":${{ steps.diff.outputs.all_changed_files }} }" >> "$GITHUB_OUTPUT" | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| build: | |
| if: "${{ fromJson(needs.gen-matrix.outputs.matrix) }}" | |
| needs: gen-matrix | |
| name: build | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| matrix: "${{ fromJson(needs.gen-matrix.outputs.matrix) }}" | |
| steps: | |
| - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29 # v4 | |
| - name: Install wave-cli | |
| run: | | |
| wget -q https://github.com/seqeralabs/wave-cli/releases/download/v${WAVE_VER}/wave-${WAVE_VER}-linux-x86_64 | |
| sudo mv wave-${WAVE_VER}-linux-x86_64 /usr/local/bin/wave | |
| chmod +x /usr/local/bin/wave | |
| - name: Create a registry name | |
| uses: actions/github-script@v7 | |
| id: registry-name | |
| with: | |
| result-encoding: string | |
| script: | | |
| return '${{ matrix.files }}'.replace('modules/nf-core/', '').replace('/environment.yml', '').replace('/', '_'); | |
| - name: Build container | |
| if: matrix.profile == 'docker' | |
| run: | | |
| wave --conda-file "${{ matrix.files }}" \ | |
| --name-strategy none \ | |
| --freeze \ | |
| --await \ | |
| --cache-repository quay.io/nf-core/wave-cache \ | |
| --tower-token ${{ secrets.TOWER_ACCESS_TOKEN }} \ | |
| --tower-workspace-id ${{ secrets.TOWER_WORKSPACE_ID }} | |
| # - name: Build Singularity | |
| # if: matrix.profile == 'singularity' | |
| # run: | | |
| # wave --conda-file "${{ matrix.files }}" \ | |
| # --freeze \ | |
| # --await \ | |
| # --cache-repository quay.io/nf-core/wave-cache/singularity \ | |
| # --tower-token ${{ secrets.TOWER_ACCESS_TOKEN }} \ | |
| # --tower-workspace-id ${{ secrets.TOWER_WORKSPACE_ID }} \ | |
| # --singularity | |
| # TODO Build from Dockerfiles |