Remove r from versions.yml

nf-core · Jan 17, 2025 · 2f32f10 · 2f32f10
1 parent 144fd56
commit 2f32f10
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Showing 9 changed files with 10 additions and 16 deletions.
diff --git a/modules/nf-core/shinyngs/app/environment.yml b/modules/nf-core/shinyngs/app/environment.yml
@@ -3,4 +3,3 @@ channels:
   - bioconda
 dependencies:
   - bioconda::r-shinyngs=2.1.0
-  - conda-forge::r-base=4.4.2
diff --git a/modules/nf-core/shinyngs/staticdifferential/environment.yml b/modules/nf-core/shinyngs/staticdifferential/environment.yml
@@ -3,4 +3,3 @@ channels:
   - bioconda
 dependencies:
   - bioconda::r-shinyngs=2.1.0
-  - conda-forge::r-base=4.4.2
diff --git a/modules/nf-core/shinyngs/staticdifferential/main.nf b/modules/nf-core/shinyngs/staticdifferential/main.nf
@@ -47,7 +47,6 @@ process SHINYNGS_STATICDIFFERENTIAL {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        r-base: \$(echo \$(R --version 2>&1) | sed 's/^.*R version //; s/ .*\$//')
         r-shinyngs: \$(Rscript -e "library(shinyngs); cat(as.character(packageVersion('shinyngs')))")
     END_VERSIONS
     """

diff --git a/modules/nf-core/shinyngs/staticdifferential/tests/main.nf.test.snap b/modules/nf-core/shinyngs/staticdifferential/tests/main.nf.test.snap
@@ -74,10 +74,10 @@
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,45c5f38af38a536b8a0869946c746adf"
+                    "versions.yml:md5,f2e3d411d3d82796173bcce72c30c20e"
                 ],
                 "versions": [
-                    "versions.yml:md5,45c5f38af38a536b8a0869946c746adf"
+                    "versions.yml:md5,f2e3d411d3d82796173bcce72c30c20e"
                 ],
                 "volcanos_html": [
                     [
@@ -109,6 +109,6 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.3"
         },
-        "timestamp": "2025-01-16T20:13:33.841282396"
+        "timestamp": "2025-01-17T11:10:38.36289072"
     }
 }
diff --git a/modules/nf-core/shinyngs/staticexploratory/environment.yml b/modules/nf-core/shinyngs/staticexploratory/environment.yml
@@ -3,4 +3,3 @@ channels:
   - bioconda
 dependencies:
   - bioconda::r-shinyngs=2.1.0
-  - conda-forge::r-base=4.4.2
diff --git a/modules/nf-core/shinyngs/validatefomcomponents/environment.yml b/modules/nf-core/shinyngs/validatefomcomponents/environment.yml
@@ -3,4 +3,3 @@ channels:
   - bioconda
 dependencies:
   - bioconda::r-shinyngs=2.1.0
-  - conda-forge::r-base=4.4.2
diff --git a/modules/nf-core/shinyngs/validatefomcomponents/main.nf b/modules/nf-core/shinyngs/validatefomcomponents/main.nf
@@ -40,7 +40,6 @@ process SHINYNGS_VALIDATEFOMCOMPONENTS {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        r-base: \$(echo \$(R --version 2>&1) | sed 's/^.*R version //; s/ .*\$//')
         r-shinyngs: \$(Rscript -e "library(shinyngs); cat(as.character(packageVersion('shinyngs')))")
     END_VERSIONS
     """

diff --git a/modules/nf-core/shinyngs/validatefomcomponents/tests/main.nf.test b/modules/nf-core/shinyngs/validatefomcomponents/tests/main.nf.test
@@ -62,7 +62,7 @@ nextflow_process {
                     file(params.modules_testdata_base_path + "genomics/mus_musculus/rnaseq_expression/Mus_musculus.anno.tsv", checkIfExists:true)
                 ]
                 input[2] = [['id':'SRP254919'],
-                    file("params.modules_testdata_base_path + "genomics/mus_musculus/rnaseq_expression/SRP254919.contrasts.yaml", checkIfExists:true)
+                    file(params.modules_testdata_base_path + "genomics/mus_musculus/rnaseq_expression/SRP254919.contrasts.yaml", checkIfExists:true)
                 ]
                 """
             }

diff --git a/modules/nf-core/shinyngs/validatefomcomponents/tests/main.nf.test.snap b/modules/nf-core/shinyngs/validatefomcomponents/tests/main.nf.test.snap
@@ -35,7 +35,7 @@
                     ]
                 ],
                 "4": [
-                    "versions.yml:md5,27850ec80be9f3b7aa6c8a19b2d60617"
+                    "versions.yml:md5,a2d30e2d652938fb225e7cf251606893"
                 ],
                 "assays": [
                     [
@@ -70,15 +70,15 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,27850ec80be9f3b7aa6c8a19b2d60617"
+                    "versions.yml:md5,a2d30e2d652938fb225e7cf251606893"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "24.10.3"
         },
-        "timestamp": "2025-01-16T20:09:27.110985279"
+        "timestamp": "2025-01-17T11:12:21.151359039"
     },
     "stub": {
         "content": [
@@ -197,7 +197,7 @@
                     ]
                 ],
                 "4": [
-                    "versions.yml:md5,27850ec80be9f3b7aa6c8a19b2d60617"
+                    "versions.yml:md5,a2d30e2d652938fb225e7cf251606893"
                 ],
                 "assays": [
                     [
@@ -232,14 +232,14 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,27850ec80be9f3b7aa6c8a19b2d60617"
+                    "versions.yml:md5,a2d30e2d652938fb225e7cf251606893"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "24.10.3"
         },
-        "timestamp": "2025-01-16T20:04:03.89610247"
+        "timestamp": "2025-01-17T11:20:18.658397016"
     }
 }