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I changed the test data to 2FAST2Q repo data, NOT NF-CORE test data, …
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…just as a way to check if it is working. The test data I was using from NF-core has the wrong input file format.
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afombravo committed Jan 19, 2025
1 parent c976063 commit 3eadb4f
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion modules/nf-core/fast2q/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ process FAST2Q {
script:
def args = task.ext.args ?: ''
def input_file = "--s ${fastq}" ?: ''
def library_file = library ? "--g ${library}" : ''
def library_file = (library instanceof Path && library.exists()) ? "--g ${library}" : ''

"""
mkdir -p ./2FAST2Q_output
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