set mmseqs2 version mmseqs2:16.747c6

nf-core · Jan 16, 2025 · ae4ab84 · ae4ab84
1 parent e2f33d3
commit ae4ab84
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Showing 4 changed files with 69 additions and 391 deletions.
diff --git a/modules/nf-core/mmseqs/tsv2exprofiledb/environment.yml b/modules/nf-core/mmseqs/tsv2exprofiledb/environment.yml
@@ -2,4 +2,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::mmseqs2=15.6f452
+  - bioconda::mmseqs2=16.747c6
diff --git a/modules/nf-core/mmseqs/tsv2exprofiledb/main.nf b/modules/nf-core/mmseqs/tsv2exprofiledb/main.nf
@@ -4,8 +4,8 @@ process MMSEQS_TSV2EXPROFILEDB {
 
     conda "${moduleDir}/environment.yml"
     container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
-        ? 'https://depot.galaxyproject.org/singularity/mmseqs2:15.6f452--pl5321h6a68c12_0'
-        : 'biocontainers/mmseqs2:15.6f452--pl5321h6a68c12_0'}"
+        ? 'https://depot.galaxyproject.org/singularity/mmseqs2:16.747c6--pl5321h6a68c12_0'
+        : 'biocontainers/mmseqs2:16.747c6--pl5321h6a68c12_0'}"
 
     input:
     path database

diff --git a/modules/nf-core/mmseqs/tsv2exprofiledb/tests/main.nf.test b/modules/nf-core/mmseqs/tsv2exprofiledb/tests/main.nf.test
@@ -63,7 +63,10 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    path(process.out.db_exprofile[0]).list().sort().collect { it.getFileName().toString() },
+                    process.out.versions
+                ).match() }
             )
         }