Trying to get deterministic results

nf-core · Jan 17, 2025 · cfc5748 · cfc5748
1 parent 5cf46fe
commit cfc5748
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Showing 3 changed files with 41 additions and 14 deletions.
diff --git a/modules/nf-core/shinyngs/staticdifferential/environment.yml b/modules/nf-core/shinyngs/staticdifferential/environment.yml
@@ -3,3 +3,4 @@ channels:
   - bioconda
 dependencies:
   - bioconda::r-shinyngs=2.1.0
+  - conda-forge::r-base=4.4.2
diff --git a/modules/nf-core/shinyngs/staticdifferential/tests/main.nf.test b/modules/nf-core/shinyngs/staticdifferential/tests/main.nf.test
@@ -59,12 +59,7 @@ nextflow_process {
         then {
             assertAll (
                 { assert process.success },
-                { assert snapshot(
-                    file(process.out.volcanos_png[0][1]).name, //assert unstable file
-                    process.out.volcanos_html,
-                    process.out.versions
-                    ).match()
-                }
+                { assert snapshot(process.out).match() }
             )
         }
     }

diff --git a/modules/nf-core/shinyngs/staticdifferential/tests/main.nf.test.snap b/modules/nf-core/shinyngs/staticdifferential/tests/main.nf.test.snap
@@ -1,19 +1,50 @@
 {
     "test": {
         "content": [
-            "volcano.png",
-            [
-
-            ],
-            [
-                "versions.yml:md5,45c5f38af38a536b8a0869946c746adf"
-            ]
+            {
+                "0": [
+                    [
+                        {
+                            "id": "treatment_mCherry_hND6_",
+                            "variable": "treatment",
+                            "reference": "mCherry",
+                            "target": "hND6",
+                            "blocking": ""
+                        },
+                        "volcano.png:md5,32d82a790e028f9476972a7f38190430"
+                    ]
+                ],
+                "1": [
+
+                ],
+                "2": [
+                    "versions.yml:md5,45c5f38af38a536b8a0869946c746adf"
+                ],
+                "versions": [
+                    "versions.yml:md5,45c5f38af38a536b8a0869946c746adf"
+                ],
+                "volcanos_html": [
+
+                ],
+                "volcanos_png": [
+                    [
+                        {
+                            "id": "treatment_mCherry_hND6_",
+                            "variable": "treatment",
+                            "reference": "mCherry",
+                            "target": "hND6",
+                            "blocking": ""
+                        },
+                        "volcano.png:md5,32d82a790e028f9476972a7f38190430"
+                    ]
+                ]
+            }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "24.10.3"
         },
-        "timestamp": "2025-01-17T12:01:51.447441326"
+        "timestamp": "2025-01-17T12:25:26.403491567"
     },
     "stub": {
         "content": [