ADD tabix index for indexcov

[lindenb]

bed.gz produced by indexcov is bgzipped but is missing an index.

This pr invokes tabix and creates a TBI index for the bed.gz file

There is a new output: bed_index

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
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• [ X Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
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    • nf-core modules test <MODULE> --profile docker
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    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
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[lindenb]

As far as I understand... It looks like the github validation is only failing when conda is used (?) .. and the checksum is not the same ??
how can I fix/bypass this ??

[SPPearce]

As far as I understand... It looks like the github validation is only failing when conda is used (?) .. and the checksum is not the same ?? how can I fix/bypass this ??

Sorry, didn't notice this PR, it is generally faster to get a response by posting in the nf-core slack.
I have updated the tests to separately snapshot each channel, except the tbi channel only looks for the name.
There is a slightly outdated page with different assertions here.

[lindenb]

@SPPearce thank you !

it is generally faster to get a response by posting in the nf-core slack.

yes, there was a thread on slack about this a few days ago but the burden for such a small change was just too demoralizing for me. https://nfcore.slack.com/archives/CE6SDBX2A/p1723041218939289

thank you again