small fixes

nf-core · Nov 18, 2024 · 3ed6734 · 3ed6734
1 parent 8bbb133
commit 3ed6734
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Showing 4 changed files with 34 additions and 3 deletions.
diff --git a/.nf-core.yml b/.nf-core.yml
@@ -7,7 +7,7 @@ org_path: null
 repository_type: pipeline
 template:
   author: Margherita Mutarelli, Lucio Di Filippo
-  description: analysis pipeline for SAMMY-seq
+  description: Analysis pipeline for SAMMY-seq
   force: false
   is_nfcore: true
   name: sammyseq

diff --git a/assets/email_template.html b/assets/email_template.html
@@ -4,7 +4,7 @@
   <meta http-equiv="X-UA-Compatible" content="IE=edge">
   <meta name="viewport" content="width=device-width, initial-scale=1">
 
-  <meta name="description" content="nf-core/sammyseq: analysis pipeline for SAMMY-seq">
+  <meta name="description" content="nf-core/sammyseq: Analysis pipeline for SAMMY-seq">
   <title>nf-core/sammyseq Pipeline Report</title>
 </head>
 <body>

diff --git a/conf/test_comparison.config b/conf/test_comparison.config
@@ -0,0 +1,31 @@
+/*
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Nextflow config file for running minimal tests
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Defines input files and everything required to run a fast and simple pipeline test.
+
+    Use as follows:
+        nextflow run nf-core/sammyseq -profile test,<docker/singularity> --outdir <OUTDIR>
+
+----------------------------------------------------------------------------------------
+*/
+
+process {
+    resourceLimits = [
+        cpus: 4,
+        memory: '15.GB',
+        time: '1.h'
+    ]
+}
+
+params {
+    config_profile_name        = 'Test profile'
+    config_profile_description = 'Minimal test dataset to check pipeline function'
+
+    // Input data
+    input  = 'https://genome.isasi.cnr.it/biocomp/test-datasets/sammyseq/testdata/chr22/samplesheet_test_github_chr22_tinier.csv'
+    comparisonFile  = 'https://genome.isasi.cnr.it/biocomp/test-datasets/sammyseq/testdata/chr22/samplesheet_test_github_chr22_tinier.csv'
+
+    // Genome references
+    fasta  = 'https://genome.isasi.cnr.it/biocomp/test-datasets/sammyseq/testdata/chr22/chr22.fa'
+}
diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -2,7 +2,7 @@
     "$schema": "https://json-schema.org/draft/2020-12/schema",
     "$id": "https://raw.githubusercontent.com/nf-core/sammyseq/master/nextflow_schema.json",
     "title": "nf-core/sammyseq pipeline parameters",
-    "description": "analysis pipeline for SAMMY-seq",
+    "description": "Analysis pipeline for SAMMY-seq",
     "type": "object",
     "$defs": {
         "input_output_options": {