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sorted genome.gtf and removed invalid entries #1029

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merged 1 commit into from
Oct 24, 2023
Merged

sorted genome.gtf and removed invalid entries #1029

merged 1 commit into from
Oct 24, 2023

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JackCurragh
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Closes #1028

Sorted the file with:

sed 's/gene/AAA/; s/transcript/BBB/; s/exon/CCC/' genome.gtf | sort -k1,1 -k4,4n -k3,3n | sed 's/AAA/gene/; s/BBB/transcript/; s/CCC/exon/' > genome.gtf.1

This is a paired PR with #4189

@JackCurragh JackCurragh requested a review from muffato October 21, 2023 11:58
@muffato muffato merged commit ceaa995 into modules Oct 24, 2023
@muffato muffato deleted the genome_gtf branch October 24, 2023 07:35
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@muffato muffato muffato approved these changes

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@JackCurragh @muffato