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update nf-schema version #8479

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update nf-schema version

update nf-schema version #8479

Triggered via pull request January 15, 2025 13:17
@nvnieuwknvnieuwk
synchronize #3401
nvnieuwk:update-nf-schema
Status Failure
Total duration 16m 36s
Artifacts 55

pytest.yml

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1 error and 112 warnings
Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
Process completed with exit code 1.
setup (3.8, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
setup (3.8, ubuntu-20.04)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
setup (3.12, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Get test file matrix
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_cli.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_cli.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_test_utils.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_test_utils.py with Python 3.12 on ubuntu-latest
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Run test_subworkflows.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_subworkflows.py with Python 3.12 on ubuntu-latest
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Run test_pipelines.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_pipelines.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_ci.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_ci.py with Python 3.12 on ubuntu-latest
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Run test_lint_utils.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_lint_utils.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
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Run test_modules.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_modules.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_files_unchanged.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_files_unchanged.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_plugin_includes.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_plugin_includes.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_configs.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_configs.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_template_strings.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_template_strings.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_rocrate.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_rocrate.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_utils.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_modules_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_remove.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_remove.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_info.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_info.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_remove.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_remove.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_patch.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_patch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_create.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_utils.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_install.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_install.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_list.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_update.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_update.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_components.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
Snapshot Report
20.1 KB
coverage_modules__test_bump_versions.py
5.86 KB
coverage_modules__test_create.py
5.81 KB
coverage_modules__test_info.py
5.94 KB
coverage_modules__test_install.py
5.91 KB
coverage_modules__test_lint.py
7.17 KB
coverage_modules__test_list.py
5.96 KB
coverage_modules__test_modules_json.py
6.02 KB
coverage_modules__test_modules_utils.py
5.8 KB
coverage_modules__test_patch.py
6.12 KB
coverage_modules__test_remove.py
5.89 KB
coverage_modules__test_update.py
6.14 KB
coverage_pipelines__lint__test_actions_awsfulltest.py
6.66 KB
coverage_pipelines__lint__test_actions_awstest.py
6.65 KB
coverage_pipelines__lint__test_actions_ci.py
6.66 KB
coverage_pipelines__lint__test_actions_schema_validation.py
6.66 KB
coverage_pipelines__lint__test_configs.py
6.66 KB
coverage_pipelines__lint__test_files_exist.py
6.68 KB
coverage_pipelines__lint__test_files_unchanged.py
6.68 KB
coverage_pipelines__lint__test_merge_markers.py
6.66 KB
coverage_pipelines__lint__test_modules_json.py
6.66 KB
coverage_pipelines__lint__test_multiqc_config.py
6.74 KB
coverage_pipelines__lint__test_nextflow_config.py
6.71 KB
coverage_pipelines__lint__test_nfcore_yml.py
6.66 KB
coverage_pipelines__lint__test_plugin_includes.py
6.66 KB
coverage_pipelines__lint__test_template_strings.py
6.97 KB
coverage_pipelines__lint__test_version_consistency.py
6.72 KB
coverage_pipelines__test_bump_version.py
5.39 KB
coverage_pipelines__test_create.py
5.32 KB
coverage_pipelines__test_create_logo.py
5.32 KB
coverage_pipelines__test_download.py
5.7 KB
coverage_pipelines__test_launch.py
5.49 KB
coverage_pipelines__test_lint.py
7.01 KB
coverage_pipelines__test_list.py
5.18 KB
coverage_pipelines__test_params_file.py
5.42 KB
coverage_pipelines__test_refgenie.py
5.19 KB
coverage_pipelines__test_rocrate.py
5.39 KB
coverage_pipelines__test_schema.py
5.42 KB
coverage_pipelines__test_sync.py
5.43 KB
coverage_subworkflows__test_create.py
6.74 KB
coverage_subworkflows__test_info.py
6.84 KB
coverage_subworkflows__test_install.py
6.82 KB
coverage_subworkflows__test_lint.py
6.98 KB
coverage_subworkflows__test_list.py
6.83 KB
coverage_subworkflows__test_patch.py
6.94 KB
coverage_subworkflows__test_remove.py
6.82 KB
coverage_subworkflows__test_update.py
6.95 KB
coverage_test_cli.py
7.06 KB
coverage_test_components.py
5.58 KB
coverage_test_lint_utils.py
5.15 KB
coverage_test_modules.py
5.79 KB
coverage_test_pipelines.py
5.16 KB
coverage_test_subworkflows.py
6.5 KB
coverage_test_test_utils.py
5.16 KB
coverage_test_utils.py
5.35 KB