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Automating pytest migration#3138

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GallVp wants to merge 12 commits intonf-core:devnf-core/tools:devfrom GallVp:pr/migpytGallVp/nf-core-tools:pr/migpytCopy head branch name to clipboard

+738-56

Commits

Commits on Aug 23, 2024

• Added a rudimentary version of --migrate-pytest-hard

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• Can now handle multiple input args

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• Now can handle [] as input and add stub option if stub in workflow name

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• Can handle [[],[]] inputs now

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• Aded a check for the number of include statements

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• Now using symbol substitution to handle cases such as [[], xyz]

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• Can now handle empty arg lists

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• Now power assertions are a bit automated

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• Improved list input regex

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• Fixed an issue where a string argument was not correctly parsed

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• Took care of txt assertion and now false/true are not treated as nxf symbols

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• Added power assertions for rds and png

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