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Dev -> main for 3.0.2#3219

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mashehu merged 57 commits intomainnf-core/tools:mainfrom devnf-core/tools:devCopy head branch name to clipboardOct 11, 2024

+1,644-1,582

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Commits on Oct 4, 2024

• Update .gitignore

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Commits on Oct 9, 2024

• bump version to 3.0.2dev

  mashehu

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• Merge pull request #3211 from mashehu/bump-to-3_0_2dev

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Commits on Oct 10, 2024

• assign schema_default when a param is found in the schema but not in the config

  mirpedrol

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• Parallelize pipeline GHA tests over docker/conda/singularity

  maxulysse

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• parse defaultIgnoreParams correctly

  mashehu

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• [automated] Fix code linting

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• Merge pull request #3213 from mirpedrol/fix-params-validation

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  mashehu

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• fix GHA

  maxulysse

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• fix template strings

  maxulysse

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• add TODO

  maxulysse

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• Fix name

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• Merge branch 'dev' into maxulysse-patch-6

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• Apply suggestions from code review

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• Update nf_core/pipeline-template/.github/workflows/ci.yml

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• test -> test_name

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• Update nf_core/pipeline-template/.github/workflows/ci.yml

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• more comments

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• Update nf_core/pipeline-template/.github/workflows/ci.yml

  maxulysse

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• minimise raw and endraw blocks

  mirpedrol

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• Update .gitignore

  maxulysse

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• Merge branch 'dev' into maxulysse-patch-5

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• Update CHANGELOG.md

  maxulysse

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• Update CHANGELOG.md

  maxulysse

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• Merge pull request #3191 from nf-core/maxulysse-patch-5

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• Merge branch 'dev' into maxulysse-patch-6

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Commits on Oct 11, 2024

• Update nf_core/pipeline-template/.github/workflows/ci.yml

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• Merge pull request #3214 from nf-core/maxulysse-patch-6

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• fix version of yaml action and change trigger event

  

  mashehu

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• checkout out the PR code, change styling of message

  

  mashehu

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  mirpedrol

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• fix condition checking if nf-core is outdated

  mirpedrol

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• use minimal-read-yaml action

  mirpedrol

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• use env variable to check nf-core outdated

  mirpedrol

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• update changelog

  mirpedrol

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• Merge pull request #3212 from mashehu/fix-template-version-comment-action

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• remove last mentions of old cli commands

  mashehu

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• bump version to 3.0.2

  mirpedrol

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• Merge branch 'dev' into fix-pipeline-commands-in-docstrings

  ewels

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• fix changelog

  mashehu

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• Merge branch 'fix-pipeline-commands-in-docstrings' of github.com:mashehu/tools into fix-pipeline-commands-in-docstrings

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• add missing section into changelog

  mashehu

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• [automated] Update CHANGELOG.md

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• Update CHANGELOG.md

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• Merge pull request #3215 from mashehu/fix-pipeline-commands-in-docstrings

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• Update CHANGELOG.md

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• Merge branch 'dev' into bump-to-3.0.2

  mirpedrol

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• disable automatic sync on release, fix handling empty pipeline name field

  mashehu

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• update changelog

  mashehu

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• update textual snapshots

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• Merge pull request #3217 from mashehu/fix-sync-action

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• Merge pull request #3216 from mirpedrol/bump-to-3.0.2

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• fix pre-commit lining failing on pipelines template

  mirpedrol

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• use multi-line string for local swf

  mirpedrol

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• update changelog

  mirpedrol

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• update template components

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• fix small typo

  mirpedrol

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• Merge pull request #3218 from mirpedrol/fix-editorconfig

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