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go back to original directory after configuring git defaultBranch [no changelog] #3342

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merged 1 commit into from
Dec 11, 2024
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go back to original directory after configuring git defaultBranch [no changelog] #3342

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3 changes: 2 additions & 1 deletion .github/workflows/sync.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -94,14 +94,15 @@ jobs:
- name: Set Git default branch from nextflow.config and set git default branch to that or "master"

run: |
cd nf-core/${{ matrix.pipeline }}
pushd nf-core/${{ matrix.pipeline }}
defaultBranch=$(grep -B5 -A5 "nextflowVersion" nextflow.config | grep "defaultBranch" | cut -d"=" -f2)
if [ -z "$defaultBranch" ]; then
defaultBranch="master"
fi
echo "Default branch: $defaultBranch"
echo "defaultBranch=$defaultBranch" >> GITHUB_OUTPUT
git config --global init.defaultBranch $defaultBranch
popd

- name: Run synchronisation
if: github.repository == 'nf-core/tools'
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