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1.6 - Brass Walrus
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@sven1103 sven1103 released this 09 Apr 11:40
1.6
4ab80b8
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Learn about vigilant mode.

Syncing

  • Code refactoring to make the script more readable
  • No travis build failure anymore on sync errors
  • More verbose logging

Template pipeline

  • awsbatch work-dir checking moved to nextflow itself. Removed unsatisfiable check in main.nf template.
  • Fixed markdown linting
  • Tools CI testing now runs markdown lint on compiled template pipeline
  • Migrated large portions of documentation to the nf-core website
  • Removed Gitter references in .github/ directories for tools/ and pipeline template.
  • Changed scrape_software_versions.py to output .csv file
  • Added export_plots parameter to multiqc config

Tools helper code

  • Drop nf-core/rnaseq from blacklist.json to make template sync available
  • Updated main help command to sort the subcommands in a more logical order
  • Updated readme to describe the new nf-core launch command
  • Fix bugs in nf-core download
    • The latest release is now fetched by default if not specified
    • Downloaded pipeline files are now properly executable.
  • Fixed bugs in nf-core list
    • Sorting now works again
    • Output is partially coloured (better highlighting out of date pipelines)
    • Improved documentation
  • Fixed bugs in nf-core lint
    • The order of conda channels is now correct, avoiding occasional erroneous errors that packages weren't found (#207)
  • Add reporting of ignored errored process
    • As a solution for #103)
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