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nf-core · Jan 16, 2025 · ac372cb · ac372cb
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diff --git a/sites/docs/src/content/api_reference/dev/api/pipelines/download.md b/sites/docs/src/content/api_reference/dev/api/pipelines/download.md
@@ -128,7 +128,7 @@ This is needed to symlink downloaded container images so Nextflow will find them
 
 #### `get_revision_hash(){:python}`
 
-Find specified revision / branch hash
+Find specified revision / branch / commit hash
 
 #### `get_singularity_images(current_revision: str = '') → None{:python}`
 

diff --git a/sites/docs/src/content/api_reference/dev/api/utils.md b/sites/docs/src/content/api_reference/dev/api/utils.md
@@ -1637,6 +1637,18 @@ Returns the most recent container versions by default.
 
 ### `nf_core.utils.get_first_available_path(directory: Path | str, paths: List[str]) → Path | None{:python}`
 
+### `nf_core.utils.get_repo_commit(pipeline, commit_id){:python}`
+
+Check if the repo contains the requested commit_id, and expand it to long form if necessary.
+
+- **Parameters:**
+  - **pipeline** (_str_) – GitHub repo username/repo
+  - **commit_id** – The requested commit ID (SHA). It can be in standard long/short form, or any length.
+- **Returns:**
+  String or None
+- **Return type:**
+  commit_id
+
 ### `nf_core.utils.get_repo_releases_branches(pipeline, wfs){:python}`
 
 Fetches details of a nf-core workflow to download.

diff --git a/sites/docs/src/content/docs/usage/Getting_started/offline.md b/sites/docs/src/content/docs/usage/Getting_started/offline.md
@@ -58,7 +58,7 @@ For more information, see the [documentation for `nf-core pipelines download`](/
 
 Some pipelines require reference genomes and have built-in integration with AWS-iGenomes.
 If you wish to use these references, you must download and transfer them to your offline cluster.
-Once transferred, follow the [reference genomes documentation](/docs/usage/reference_genomes/reference_genomes.md) to configure the base path for the references.
+Once transferred, follow the [reference genomes documentation](/docs/usage/reference_genomes) to configure the base path for the references.
 
 ## Bytesize talk
 

diff --git a/sites/main-site/src/content/events/2025/bytesize_data_storage.md b/sites/main-site/src/content/events/2025/bytesize_data_storage.md
@@ -6,10 +6,11 @@ startDate: '2025-01-14'
 startTime: '13:00+01:00'
 endDate: '2025-01-14'
 endTime: '13:30+01:00'
+youtubeEmbed: https://youtu.be/7wmaWU6-pYM
 locations:
   - name: Online
     links:
-      - https://kth-se.zoom.us/j/68390542812
+      - https://youtu.be/7wmaWU6-pYM
 ---
 
 In this week's bytesize, Rob Syme ([@robsyme](https://github.com/robsyme)) introduces how the concepts that make Git so helpful might also be used to improve provenance tracking and collaboration when working with Nextflow workflows. Data and metadata are handled elegantly inside of Nextflow workflows, but sensibly handling metadata on the filesystem can be a challenge. Is there a way we can move away from using paths like `/data/do-not-delete/RELECOV/samples/SAMD00818643/NextSeq 550/202116335/paired/214115_S151_R1_001.fastq.gz.1`?
diff --git a/sites/main-site/src/content/events/2025/hackathon-march-2025/index.mdx b/sites/main-site/src/content/events/2025/hackathon-march-2025/index.mdx
@@ -65,6 +65,7 @@ Even if you are attending a local site you will still join everyone online in Ga
 | ----------------- | ---------- | ---------------------------------------------- | -------------------------------------------------------------------------------------------------- |
 | 🇧🇪 Belgium        | Ghent      | Ghent University                               | [Read more](/events/2025/hackathon-march-2025/ghent-university)                                    |
 | 🇧🇷 Brazil         | Natal      | Federal University of Rio Grande do Norte      | [Read more](/events/2025/hackathon-march-2025/university-of-rio-grande-do-norte)                   |
+| 🇧🇷 Brazil         | Guarapuava | Federal Technological University of Paraná     | [Read more](/events/2025/hackathon-march-2025/utfpr_brazil)                                        |
 | 🇨🇿 Czech Republic | Brno       | CEITEC MU                                      | [Read more](/events/2025/hackathon-march-2025/ceitec-mu)                                           |
 | 🇨🇴 Colombia       | Bogota     | University of the Andes                        | [Read more](/events/2025/hackathon-march-2025/bogota-colombia)                                     |
 | 🇫🇷 France         | Rennes     | Institut of Genetics & Development of Rennes   | [Read more](/events/2025/hackathon-march-2025/institut-of-genetics-development-of-rennes)          |

diff --git a/...s/main-site/src/content/events/2025/hackathon-march-2025/uppsala-university.mdx b/...s/main-site/src/content/events/2025/hackathon-march-2025/uppsala-university.mdx
@@ -17,8 +17,21 @@ locations:
 layout: '@layouts/events/HackathonMarch2025.astro'
 ---
 
-Attendees from outside Uppsala University **cannot** attend.
+Attendees from outside Uppsala University **can** attend.
 
-Main contact: Matilda Åslin ([matilda.aslin@medsci.uu.se](mailto:matilda.aslin@medsci.uu.se))
+Organizers:
 
-Venue not yet booked, please check back later for more information.
+-   [<i class="fab fa-slack"></i> Matilda Åslin](https://nfcore.slack.com/team/UN7VCPD35) ([matilda.aslin@medsci.uu.se](mailto:matilda.aslin@medsci.uu.se))
+-   [<i class="fab fa-slack"></i> Adrien Coulier](https://nfcore.slack.com/team/U044S8RL7K7)
+
+## Venue
+
+For anyone with access, this room is booked for the event: [E10:3303](https://link.mazemap.com/IrrlLmuc)
+
+## Access
+
+:::warning
+If you do not already have access to Navet (main buidling of SciLifeLab Uppsala), you will not be able to access the room without assistance. Please be at entrace C11 before **9 am**, or, if that is not possible, inform one of the organizers on Slack at what time you will arrive, and they will pick you up.
+:::
+
+More info to come! Please check back later for more information.
diff --git a/sites/main-site/src/content/events/2025/hackathon-march-2025/utfpr_brazil.mdx b/sites/main-site/src/content/events/2025/hackathon-march-2025/utfpr_brazil.mdx
@@ -0,0 +1,26 @@
+---
+title: 'Hackathon - March 2025 (Federal Technological University of Paraná - UTFPR)'
+subtitle: 'Local node of the nf-core hackathon at Federal Technological University of Paraná - UTFPR, Brazil'
+shortTitle: '🇧🇷 Federal Technological University of Paraná - UTFPR'
+type: 'hackathon'
+startDate: '2025-03-24'
+startTime: '09:00-03:00'
+endDate: '2025-03-26'
+endTime: '17:00-03:00'
+locations:
+    - name: Federal Technological University of Paraná - UTFPR
+      address: |
+          Av. Profa. Laura Pacheco Bastos, 800 - Industrial, Guarapuava - PR, 85053-525
+      links:
+          - https://www.utfpr.edu.br/campus/guarapuava
+          - https://maps.app.goo.gl/eGvbpGk1C2KBFJwB8
+      geoCoordinates: [-25.3505666421501, -51.4795110688926]
+
+layout: '@layouts/events/HackathonMarch2025.astro'
+---
+
+Attendees from outside Federal Technological University of Paraná - UTFPR **can** attend.
+
+Main contact: Mateus Lucas Falco ([matlucfalco@gmail.com](mailto:matlucfalco@gmail.com))
+
+Venue not yet booked, please check back later for more information.