[automated] Update json files and markdown cache

nf-core · Jan 19, 2025 · c9e66b9 · c9e66b9
1 parent 963d119
commit c9e66b9
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Showing 3 changed files with 48 additions and 16 deletions.
diff --git a/.cache.tar.xz b/.cache.tar.xz
diff --git a/public/components.json b/public/components.json
@@ -8724,6 +8724,10 @@
           "name": "rnafusion",
           "version": "3.0.2"
         },
+        {
+          "name": "rnafusion",
+          "version": "3.0.2"
+        },
         {
           "name": "rnafusion",
           "version": "3.0.2"
@@ -109289,6 +109293,22 @@
           "name": "pathogensurveillance",
           "version": "dev"
         },
+        {
+          "name": "phyloplace",
+          "version": "1.0.0"
+        },
+        {
+          "name": "ampliseq",
+          "version": "2.12.0"
+        },
+        {
+          "name": "multiplesequencealign",
+          "version": "1.0.0"
+        },
+        {
+          "name": "pathogensurveillance",
+          "version": "dev"
+        },
         {
           "name": "phyloplace",
           "version": "1.0.0"
@@ -134740,6 +134760,10 @@
           "name": "viralrecon",
           "version": "2.6.0"
         },
+        {
+          "name": "viralrecon",
+          "version": "2.6.0"
+        },
         {
           "name": "viralrecon",
           "version": "2.6.0"
@@ -209988,6 +210012,10 @@
           "name": "phageannotator",
           "version": "dev"
         },
+        {
+          "name": "phageannotator",
+          "version": "dev"
+        },
         {
           "name": "phageannotator",
           "version": "dev"
@@ -213758,6 +213786,10 @@
           "name": "riboseq",
           "version": "1.0.1"
         },
+        {
+          "name": "riboseq",
+          "version": "1.0.1"
+        },
         {
           "name": "riboseq",
           "version": "1.0.1"

diff --git a/public/pipelines.json b/public/pipelines.json
@@ -5710,7 +5710,7 @@
             "forks_count": 6,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 13,
+            "open_issues_count": 14,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -5724,7 +5724,7 @@
             ],
             "visibility": "public",
             "forks": 6,
-            "open_issues": 13,
+            "open_issues": 14,
             "watchers": 7,
             "default_branch": "dev",
             "temp_clone_token": "",
@@ -30929,9 +30929,9 @@
             "url": "https://api.github.com/repos/nf-core/raredisease",
             "created_at": "2021-06-21T09:40:29Z",
             "updated_at": "2025-01-11T10:36:52Z",
-            "pushed_at": "2025-01-17T16:57:33Z",
+            "pushed_at": "2025-01-18T17:52:29Z",
             "homepage": "https://nf-co.re/raredisease",
-            "size": 13805,
+            "size": 13811,
             "stargazers_count": 93,
             "watchers_count": 93,
             "language": "Nextflow",
@@ -34251,12 +34251,12 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/rnaseq",
             "created_at": "2018-03-29T13:10:58Z",
-            "updated_at": "2025-01-17T07:24:07Z",
+            "updated_at": "2025-01-18T15:03:10Z",
             "pushed_at": "2025-01-13T11:08:36Z",
             "homepage": "https://nf-co.re/rnaseq",
             "size": 74980,
-            "stargazers_count": 961,
-            "watchers_count": 961,
+            "stargazers_count": 962,
+            "watchers_count": 962,
             "language": "Nextflow",
             "has_issues": true,
             "has_projects": false,
@@ -34278,7 +34278,7 @@
             "visibility": "public",
             "forks": 717,
             "open_issues": 74,
-            "watchers": 961,
+            "watchers": 962,
             "default_branch": "master",
             "temp_clone_token": "",
             "allow_squash_merge": false,
@@ -40408,10 +40408,10 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/scdownstream",
             "created_at": "2024-06-11T06:38:31Z",
-            "updated_at": "2025-01-17T22:19:09Z",
-            "pushed_at": "2025-01-17T22:19:11Z",
+            "updated_at": "2025-01-18T20:35:56Z",
+            "pushed_at": "2025-01-18T20:35:54Z",
             "homepage": "https://nf-co.re/scdownstream",
-            "size": 2019,
+            "size": 2024,
             "stargazers_count": 45,
             "watchers_count": 45,
             "language": "Nextflow",
@@ -40541,7 +40541,7 @@
             "contributors": [
                 {
                     "name": "nictru",
-                    "count": 464,
+                    "count": 465,
                     "avatar_url": "https://avatars.githubusercontent.com/u/52698566?v=4"
                 },
                 {
@@ -40586,9 +40586,9 @@
                 }
             ],
             "released_after_tools": false,
-            "head_sha": "3efed775758534b895bba916197ccdda2c69b6b7",
+            "head_sha": "85a3ca5c56c470b692b0b3533d58649da3006667",
             "last_release_is_head": false,
-            "last_release_vs_default_compare_url": "https://github.com/nf-core/scdownstream/compare/3efed775758534b895bba916197ccdda2c69b6b7...undefined",
+            "last_release_vs_default_compare_url": "https://github.com/nf-core/scdownstream/compare/85a3ca5c56c470b692b0b3533d58649da3006667...undefined",
             "commits_to_dev": 30,
             "is_DSL2": true,
             "has_nf_test": false,
@@ -40611,8 +40611,8 @@
             "releases": [
                 {
                     "tag_name": "dev",
-                    "published_at": "2025-01-17T22:19:07Z",
-                    "tag_sha": "3efed775758534b895bba916197ccdda2c69b6b7",
+                    "published_at": "2025-01-18T20:35:53Z",
+                    "tag_sha": "85a3ca5c56c470b692b0b3533d58649da3006667",
                     "has_schema": true,
                     "doc_files": [
                         "docs/output.md",