[automated] Update json files and markdown cache

nf-core · Jan 18, 2025 · e2414ae · e2414ae
1 parent 8fc491f
commit e2414ae
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Showing 3 changed files with 52 additions and 20 deletions.
diff --git a/.cache.tar.xz b/.cache.tar.xz
diff --git a/public/components.json b/public/components.json
@@ -8720,6 +8720,10 @@
           "name": "rnafusion",
           "version": "3.0.2"
         },
+        {
+          "name": "rnafusion",
+          "version": "3.0.2"
+        },
         {
           "name": "rnafusion",
           "version": "3.0.2"
@@ -109269,6 +109273,22 @@
           "name": "pathogensurveillance",
           "version": "dev"
         },
+        {
+          "name": "phyloplace",
+          "version": "1.0.0"
+        },
+        {
+          "name": "ampliseq",
+          "version": "2.12.0"
+        },
+        {
+          "name": "multiplesequencealign",
+          "version": "1.0.0"
+        },
+        {
+          "name": "pathogensurveillance",
+          "version": "dev"
+        },
         {
           "name": "phyloplace",
           "version": "1.0.0"
@@ -134716,6 +134736,10 @@
           "name": "viralrecon",
           "version": "2.6.0"
         },
+        {
+          "name": "viralrecon",
+          "version": "2.6.0"
+        },
         {
           "name": "viralrecon",
           "version": "2.6.0"
@@ -209960,6 +209984,10 @@
           "name": "phageannotator",
           "version": "dev"
         },
+        {
+          "name": "phageannotator",
+          "version": "dev"
+        },
         {
           "name": "phageannotator",
           "version": "dev"
@@ -213726,6 +213754,10 @@
           "name": "riboseq",
           "version": "1.0.1"
         },
+        {
+          "name": "riboseq",
+          "version": "1.0.1"
+        },
         {
           "name": "riboseq",
           "version": "1.0.1"

diff --git a/public/pipelines.json b/public/pipelines.json
@@ -4725,9 +4725,9 @@
             "url": "https://api.github.com/repos/nf-core/circrna",
             "created_at": "2021-02-10T14:28:49Z",
             "updated_at": "2025-01-17T22:28:22Z",
-            "pushed_at": "2025-01-17T23:01:57Z",
+            "pushed_at": "2025-01-18T12:21:54Z",
             "homepage": "https://nf-co.re/circrna",
-            "size": 73619,
+            "size": 73654,
             "stargazers_count": 48,
             "watchers_count": 48,
             "language": "Nextflow",
@@ -5694,10 +5694,10 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/createtaxdb",
             "created_at": "2023-10-24T08:41:35Z",
-            "updated_at": "2025-01-13T19:21:37Z",
-            "pushed_at": "2025-01-17T10:40:30Z",
+            "updated_at": "2025-01-18T10:16:33Z",
+            "pushed_at": "2025-01-18T10:16:34Z",
             "homepage": "https://nf-co.re/createtaxdb",
-            "size": 3255,
+            "size": 3256,
             "stargazers_count": 7,
             "watchers_count": 7,
             "language": "Nextflow",
@@ -5710,7 +5710,7 @@
             "forks_count": 6,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 15,
+            "open_issues_count": 13,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -5724,7 +5724,7 @@
             ],
             "visibility": "public",
             "forks": 6,
-            "open_issues": 15,
+            "open_issues": 13,
             "watchers": 7,
             "default_branch": "dev",
             "temp_clone_token": "",
@@ -5832,12 +5832,12 @@
             "TEMPLATE_branch_protection_enforce_admins": -1,
             "TEMPLATE_restrict_push": true,
             "has_required_topics": true,
-            "open_pr_count": 2,
+            "open_pr_count": 1,
             "repository_url": "https://github.com/nf-core/createtaxdb",
             "contributors": [
                 {
                     "name": "jfy133",
-                    "count": 153,
+                    "count": 158,
                     "avatar_url": "https://avatars.githubusercontent.com/u/17950287?v=4"
                 },
                 {
@@ -5862,9 +5862,9 @@
                 }
             ],
             "released_after_tools": false,
-            "head_sha": "b932606c5bde73440dbe284f147826ffb35154eb",
+            "head_sha": "5d55c3d45a7a9069e56fd71a5d27408c19912245",
             "last_release_is_head": false,
-            "last_release_vs_default_compare_url": "https://github.com/nf-core/createtaxdb/compare/b932606c5bde73440dbe284f147826ffb35154eb...undefined",
+            "last_release_vs_default_compare_url": "https://github.com/nf-core/createtaxdb/compare/5d55c3d45a7a9069e56fd71a5d27408c19912245...undefined",
             "commits_to_dev": 30,
             "is_DSL2": true,
             "has_nf_test": true,
@@ -5887,8 +5887,8 @@
             "releases": [
                 {
                     "tag_name": "dev",
-                    "published_at": "2025-01-13T19:21:33Z",
-                    "tag_sha": "b932606c5bde73440dbe284f147826ffb35154eb",
+                    "published_at": "2025-01-18T10:16:30Z",
+                    "tag_sha": "5d55c3d45a7a9069e56fd71a5d27408c19912245",
                     "has_schema": true,
                     "doc_files": [
                         "docs/output.md",
@@ -37703,12 +37703,12 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/sarek",
             "created_at": "2019-04-30T15:43:00Z",
-            "updated_at": "2025-01-12T23:27:30Z",
+            "updated_at": "2025-01-18T05:19:53Z",
             "pushed_at": "2025-01-17T02:22:15Z",
             "homepage": "https://nf-co.re/sarek",
             "size": 100371,
-            "stargazers_count": 415,
-            "watchers_count": 415,
+            "stargazers_count": 416,
+            "watchers_count": 416,
             "language": "Nextflow",
             "has_issues": true,
             "has_projects": false,
@@ -37739,7 +37739,7 @@
             "visibility": "public",
             "forks": 421,
             "open_issues": 303,
-            "watchers": 415,
+            "watchers": 416,
             "default_branch": "master",
             "temp_clone_token": "",
             "allow_squash_merge": true,
@@ -41358,7 +41358,7 @@
             "has_wiki": false,
             "has_pages": false,
             "has_discussions": false,
-            "forks_count": 176,
+            "forks_count": 177,
             "archived": false,
             "disabled": false,
             "open_issues_count": 57,
@@ -41377,7 +41377,7 @@
                 "star-solo"
             ],
             "visibility": "public",
-            "forks": 176,
+            "forks": 177,
             "open_issues": 57,
             "watchers": 224,
             "default_branch": "master",
@@ -41411,7 +41411,7 @@
                     "status": "disabled"
                 }
             },
-            "network_count": 176,
+            "network_count": 177,
             "subscribers_count": 137,
             "team_contributors_permission_push": true,
             "team_contributors_permission_admin": false,