Merge pull request #3 from nvnieuwk/dev

Version 0.1.1 patch release

CHANGELOG.md

@@ -0,0 +1,7 @@
+# 0.1.1 - Transform
+## Fixes
+- Fixed a bug where the samples were missing from the header
+
+# 0.1.0 - Change
+
+Initial release

svync.go

@@ -13,7 +13,7 @@ func main() {
 		Name:            "svync",
 		Usage:           "A tool to standardize VCF files from structural variant callers",
 		HideHelpCommand: true,
-		Version:         "0.1.0",
+		Version:         "0.1.1",
 		Flags: []cli.Flag{
 			&cli.BoolFlag{
 				Name:     "nodate",

svync_api/execute.go

@@ -127,14 +127,13 @@ func parseLine(
 	stdout bool,
 	variantCount *int,
 ) {
-	if !strings.HasSuffix(line, "#") && !*headerIsMade {
-		writeHeader(config, Cctx, header, outputFile, stdout)
-		*headerIsMade = true
-	}
-
 	if strings.HasPrefix(line, "#") {
 		header.parse(line)
 	} else {
+		if !*headerIsMade {
+			writeHeader(config, Cctx, header, outputFile, stdout)
+			*headerIsMade = true
+		}
 		// id := strings.Split(line, "\t")[2]
 		variant := createVariant(line, header, Cctx)