Merge branch 'master' into 3096_NTR_pulmonary_venule

.github/workflows/qc.yml

@@ -27,10 +27,35 @@ jobs:
       - uses: actions/checkout@v2
 
       - name: Run ontology QC checks
+        id: check
+        continue-on-error: true
         env:
           DEFAULT_BRANCH: master
           ROBOT_JAVA_ARGS: -Xmx6G
         run: cd src/ontology && mkdir -p tmp reports mirror && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' GH_ACTION=true BRI=false MIR=false IMP=false test > TESTLOG.log
+
+      - name: Reason over taxon constraints
+        id: explaintc
+        continue-on-error: true
+        if: steps.check.outcome == 'failure'
+        run: |
+          if [ -s src/ontology/reports/taxon-constraint-check.txt ]; then
+            robot explain -i src/ontology/tmp/uberon-edit-plus-tax-equivs.owl -M unsatisfiability -u all -r ELK -e taxon-unsats.md
+            echo "<details>\n<summary>This PR violates some taxon constraints. Here is what the reasoner has to say:</summary>\n" > comment.md
+            cat taxon-unsats.md >> comment.md
+            echo "</details>" >> comment.md
+            exit 1
+          fi
+      - name: Post explanation for taxon constraint violations
+        if: steps.explaintc.outcome == 'failure'
+        uses: NejcZdovc/comment-pr@v2
+        with:
+          github_token: ${{secrets.GITHUB_TOKEN}}
+          file: "../../comment.md"
+          identifier: "TAXON_CONSTRAINTS_REASONING"
+
       - name: Last rows of QC report
-        if: ${{ failure() }}
-        run: tail -20 src/ontology/TESTLOG.log
+        if: steps.check.outcome == 'failure'
+        run: |
+          tail -20 src/ontology/TESTLOG.log
+          exit 1

README.md

@@ -32,3 +32,5 @@ To trigger an automated human readable diff, add the following tag to a comment
 ## Editors:
 
 See the file [README-editors.txt](bridge/../README-editors.txt)
+
+See the [Standard Operating Procedure for Uberon Curators](bridge/../docs/uberon-editor-sop.md).

bridge/external-disjoints.owl

@@ -85,7 +85,9 @@
 
     <!-- http://www.geneontology.org/formats/oboInOwl#id -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
+        <rdfs:label>id</rdfs:label>
+    </owl:AnnotationProperty>
 
 
 
@@ -3778,5 +3780,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
 

docs/odk-workflows/RepositoryFileStructure.md

@@ -28,6 +28,7 @@ These are the current imports in UBERON
 | ncbitaxon | http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl | None |
 | nbo | http://purl.obolibrary.org/obo/nbo.owl | None |
 | orcidio | https://w3id.org/orcidio/orcidio.owl | None |
+| omo | http://purl.obolibrary.org/obo/omo.owl | mirror |
 
 ## Components
 Components, in contrast to imports, are considered full members of the ontology. This means that any axiom in a component is also included in the ontology base - which means it is considered _native_ to the ontology. While this sounds complicated, consider this: conceptually, no component should be part of more than one ontology. If that seems to be the case, we are most likely talking about an import. Components are often not needed for ontologies, but there are some use cases:

mkdocs.yaml

@@ -11,7 +11,7 @@ nav:
       - Acknowledgements: acknowledgements.md
       - Cite: cite.md
   - Browse:
-      - OLS: https://www.ebi.ac.uk/ols/ontologies/uberon
+      - OLS: https://www.ebi.ac.uk/ols4/ontologies/uberon
       - Ontobee: http://www.ontobee.org/ontology/UBERON
       - BioPortal: https://bioportal.bioontology.org/ontologies/UBERON
       - Bgee Anatomical Homology: https://bgee.org/?page=anat_similarities
@@ -34,6 +34,7 @@ nav:
           - Your ODK Repository Overview: odk-workflows/RepositoryFileStructure.md
   - Uberon Internal Docs: 
       - Uberon Release: uberon-release.md
+      - Standard Operating Procedure for Uberon Curators: uberon-editor-sop.md
   - References:
       - Wiki: https://github.com/obophenotype/uberon/wiki
       - Uberon Manual: https://github.com/obophenotype/uberon/wiki/Manual

src/ontology/Makefile

@@ -114,7 +114,7 @@ all_main: $(MAIN_FILES)
 # ----------------------------------------
 
 
-IMPORTS =  pr cl go envo ro bspo chebi pato bfo ncbitaxon nbo orcidio
+IMPORTS =  pr cl go envo ro bspo chebi pato bfo ncbitaxon ncbitaxondisjoints nbo orcidio omo
 
 IMPORT_ROOTS =  $(IMPORTDIR)/merged_import
 IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl)
@@ -339,6 +339,12 @@ $(IMPORTDIR)/%_import.owl: $(MIRRORDIR)/merged.owl $(IMPORTDIR)/%_terms_combined
 
 .PRECIOUS: $(IMPORTDIR)/%_import.owl
 
+## Module for ontology: omo
+
+$(IMPORTDIR)/omo_import.owl: $(MIRRORDIR)/merged.owl $(IMPORTDIR)/omo_terms_combined.txt
+	if [ $(IMP) = true ]; then $(ROBOT) merge -i $< query --update ../sparql/preprocess-module.ru --update ../sparql/inject-subset-declaration.ru --update ../sparql/inject-synonymtype-declaration.ru --update ../sparql/postprocess-module.ru  \
+    $(ANNOTATE_CONVERT_FILE); fi
+
 
 .PHONY: refresh-imports
 refresh-imports:
@@ -427,8 +433,9 @@ mirror-cl: | $(TMPDIR)
 .PHONY: mirror-go
 .PRECIOUS: $(MIRRORDIR)/go.owl
 mirror-go: | $(TMPDIR)
-	if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(OBOBASE)/go/go-base.owl --create-dirs -o $(MIRRORDIR)/go.owl --retry 4 --max-time 200 &&\
-		$(ROBOT) convert -i $(MIRRORDIR)/go.owl -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi
+	if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I http://purl.obolibrary.org/obo/go/go-base.owl -o $@.tmp.owl && \
+		$(ROBOT) remove -i $@.tmp.owl --base-iri http://purl.obolibrary.org/obo/GO_ --base-iri http://purl.obolibrary.org/obo/GOREL_ --base-iri http://purl.obolibrary.org/obo/GOCHE_ --axioms external --preserve-structure false --trim false -o $@.tmp.owl &&\
+		mv $@.tmp.owl $(TMPDIR)/$@.owl; fi
 
 
 ## ONTOLOGY: envo
@@ -489,6 +496,14 @@ mirror-ncbitaxon: | $(TMPDIR)
 		mv $@.tmp.owl $(TMPDIR)/$@.owl; fi
 
 
+## ONTOLOGY: ncbitaxondisjoints
+.PHONY: mirror-ncbitaxondisjoints
+.PRECIOUS: $(MIRRORDIR)/ncbitaxondisjoints.owl
+mirror-ncbitaxondisjoints: | $(TMPDIR)
+	if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl -o $@.tmp.owl &&\
+		mv $@.tmp.owl $(TMPDIR)/$@.owl; fi
+
+
 ## ONTOLOGY: nbo
 .PHONY: mirror-nbo
 .PRECIOUS: $(MIRRORDIR)/nbo.owl
@@ -504,6 +519,15 @@ mirror-orcidio: | $(TMPDIR)
 	if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I https://w3id.org/orcidio/orcidio.owl -o $@.tmp.owl &&\
 		mv $@.tmp.owl $(TMPDIR)/$@.owl; fi
 
+
+## ONTOLOGY: omo
+.PHONY: mirror-omo
+.PRECIOUS: $(MIRRORDIR)/omo.owl
+mirror-omo: | $(TMPDIR)
+	if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(OBOBASE)/omo.owl --create-dirs -o $(MIRRORDIR)/omo.owl --retry 4 --max-time 200 &&\
+		$(ROBOT) convert -i $(MIRRORDIR)/omo.owl -o $@.tmp.owl &&\
+		mv $@.tmp.owl $(TMPDIR)/$@.owl; fi
+
 ALL_MIRRORS = $(patsubst %, $(MIRRORDIR)/%.owl, $(IMPORTS))
 MERGE_MIRRORS = true
 

src/ontology/bridge/cl-bridge-to-aao.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-aao
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to aao" xsd:string
 property_value: dc-description "Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string

src/ontology/bridge/cl-bridge-to-aao.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2023-09-05/uberon/bridge/cl-bridge-to-aao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2023-10-27/uberon/bridge/cl-bridge-to-aao.owl"/>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Erik Segerdell</dc:contributor>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>

src/ontology/bridge/cl-bridge-to-aeo.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-aeo
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

src/ontology/bridge/cl-bridge-to-aeo.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo/2023-09-05/uberon/bridge/cl-bridge-to-aeo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo/2023-10-27/uberon/bridge/cl-bridge-to-aeo.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

src/ontology/bridge/cl-bridge-to-bila.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-bila
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

src/ontology/bridge/cl-bridge-to-bila.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2023-09-05/uberon/bridge/cl-bridge-to-bila.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2023-10-27/uberon/bridge/cl-bridge-to-bila.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

src/ontology/bridge/cl-bridge-to-bspo.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-bspo
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

src/ontology/bridge/cl-bridge-to-bspo.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2023-09-05/uberon/bridge/cl-bridge-to-bspo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2023-10-27/uberon/bridge/cl-bridge-to-bspo.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

src/ontology/bridge/cl-bridge-to-caro.obo

@@ -1,11 +1,11 @@
 ontology: uberon/bridge/cl-bridge-to-caro
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]
 id: CARO:0000013 ! 
-property_value: IAO:0000589 "native cell (CARO)" xsd:string
-equivalent_to: CL:0000003 ! native cell
+property_value: IAO:0000589 "obsolete native cell (CARO)" xsd:string
+equivalent_to: CL:0000003 ! obsolete native cell
 
 [Term]
 id: CARO:0000077 ! 

src/ontology/bridge/cl-bridge-to-caro.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2023-09-05/uberon/bridge/cl-bridge-to-caro.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2023-10-27/uberon/bridge/cl-bridge-to-caro.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 
@@ -318,7 +318,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000013">
         <owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/CL_0000003"/>
-        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">native cell (CARO)</obo:IAO_0000589>
+        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete native cell (CARO)</obo:IAO_0000589>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CARO:0000013</oboInOwl:id>
     </owl:Class>
 

src/ontology/bridge/cl-bridge-to-dhba.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-dhba
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

src/ontology/bridge/cl-bridge-to-dhba.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba/2023-09-05/uberon/bridge/cl-bridge-to-dhba.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba/2023-10-27/uberon/bridge/cl-bridge-to-dhba.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

src/ontology/bridge/cl-bridge-to-efo.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-efo
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

src/ontology/bridge/cl-bridge-to-efo.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo/2023-09-05/uberon/bridge/cl-bridge-to-efo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo/2023-10-27/uberon/bridge/cl-bridge-to-efo.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

src/ontology/bridge/cl-bridge-to-ehdaa.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ehdaa
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

src/ontology/bridge/cl-bridge-to-ehdaa.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2023-09-05/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2023-10-27/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

src/ontology/bridge/cl-bridge-to-ehdaa2.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ehdaa2
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to ehdaa2" xsd:string
 property_value: dc-description "Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA" xsd:string

src/ontology/bridge/cl-bridge-to-ehdaa2.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2023-09-05/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2023-10-27/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jonathan Bard</dc:contributor>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
         <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA</dc:description>

src/ontology/bridge/cl-bridge-to-emapa.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-emapa
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to emapa" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL" xsd:string

src/ontology/bridge/cl-bridge-to-emapa.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2023-09-05/uberon/bridge/cl-bridge-to-emapa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2023-10-27/uberon/bridge/cl-bridge-to-emapa.owl"/>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anne Niknejad</dc:creator>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Aurelie Comte</dc:creator>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>

src/ontology/bridge/cl-bridge-to-ev.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ev
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

src/ontology/bridge/cl-bridge-to-ev.owl

@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev/2023-09-05/uberon/bridge/cl-bridge-to-ev.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev/2023-10-27/uberon/bridge/cl-bridge-to-ev.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

src/ontology/bridge/cl-bridge-to-fbbt.obo

@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-fbbt
-data-version: 2023-09-05
+data-version: 2023-10-27
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to fbbt" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology" xsd:string