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Introduction

Welcome to the CellMAPtracer Wiki! This is a page containing supplementary documentation for the CellMAPtracer app.

Content

Trajectory analysis

This wiki contains a couple of R markdown files that supplement the CellMAPtracer software. They run trajectory analysis and take the output data resulted from CellMAPTracer and CellMAPTracer-FUCCI as input. They enable users to:

• Estimate the doubling time of the tracked cell population
• Compute and visualize several trajectory measures, including average speed, directionality, distance and displacement
• Visualize the lineage tree of a target cell and its descendants
• Characterize the heterogeneity between daughter cells
• Highlight the changes in the profiles of directionality and speed across the cell cycle phases

Images

The "Supplementary material" page contains a couple of images that complement the CellMAPtracer scientific paper (undergoing submission process).

How to navigate the Wiki

Please click on the files on the sidebar to begin. The sidebar may be located on the right or at the bottom, depending on how large your screen is. You can simply read the pages or use their inputs on your own interactive R session.