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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 5

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 236 repositories
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 5 5 5 Updated Jan 24, 2025
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 1 MIT 1 0 1 Updated Jan 24, 2025
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 4 0 1 Updated Jan 24, 2025
  • variantMerging Public

    a workflow for combining variant calls from SNV analyses done with different callers

    oicr-gsi/variantMerging’s past year of commit activity
    Python 0 GPL-2.0 0 0 1 Updated Jan 23, 2025
  • cardea Public

    Case data API

    oicr-gsi/cardea’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Jan 23, 2025
  • dashi Public

    Python Dash visualization of OICR QC data

    oicr-gsi/dashi’s past year of commit activity
    Python 4 MIT 2 0 1 Updated Jan 22, 2025
  • vidarrTracker Public

    A simple logger of workflow deployment to vidarr instances

    oicr-gsi/vidarrTracker’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 22, 2025
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 GPL-3.0 0 0 1 Updated Jan 21, 2025
  • Dragen-Align Public

    Lane Level (single fastq pair) alignments using Dragen

    oicr-gsi/Dragen-Align’s past year of commit activity
    WDL 0 0 0 1 Updated Jan 21, 2025
  • mrdetect Public

    workflow to detect Minimal Residual disease with MRDetect

    oicr-gsi/mrdetect’s past year of commit activity
    WDL 0 0 1 0 Updated Jan 21, 2025
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